PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541685.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 1049aa    MW: 116231 Da    PI: 6.5771
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.73.8e-2270170198
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d +  sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +dg+s 
  XP_010541685.1  70 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDIHESSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDGKS- 162
                     99*****************************9445444.38************************************************76644. PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                      +l+++++ 
  XP_010541685.1 163 -QLLLGIRH 170
                     .45888775 PP
2Auxin_resp1201.8e-39196278183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra+++eFvv+++k+ ka++++vs+GmRf+m+fete++  rr++Gt++gvsdldp+rW+nS+Wr+L+
  XP_010541685.1 196 AAHAATNNSPFTIFYNPRAAPTEFVVPLAKYTKAMYSQVSLGMRFRMMFETEECGVRRYMGTITGVSDLDPLRWKNSQWRNLQ 278
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.68E-4361199IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-4162185IPR015300DNA-binding pseudobarrel domain
CDDcd100176.81E-1969169No hitNo description
SMARTSM010192.7E-2370172IPR003340B3 DNA binding domain
PROSITE profilePS5086311.98470172IPR003340B3 DNA binding domain
PfamPF023622.5E-2070170IPR003340B3 DNA binding domain
PfamPF065071.3E-34196278IPR010525Auxin response factor
PfamPF023097.6E-99161004IPR033389AUX/IAA domain
PROSITE profilePS5174527.4669191012IPR000270PB1 domain
SuperFamilySSF542774.91E-9932998No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1049 aa     Download sequence    Send to blast
MQKQTDFIPS YPNLPSKLIC MLHSVTLHAD PETDEVYAQM TLQPVNKYDK DALFASELGL  60
KQNRQPSEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FSMQPPAQEL VAKDIHESSW  120
TFRHIYRGQP KRHLLTTGWS VFVSTKRLFA GDSVLFIRDG KSQLLLGIRH ANRQQPALSS  180
SVISSDSMHI GILAAAAHAA TNNSPFTIFY NPRAAPTEFV VPLAKYTKAM YSQVSLGMRF  240
RMMFETEECG VRRYMGTITG VSDLDPLRWK NSQWRNLQVG WDESAAGDRP SRVSVWDIEP  300
VLTPFYICPP PFFRPKFPGQ HGMPEDESDI ETALKRAMPW LGDSFDMKDS SSSSFPGLSL  360
VQWMNMQQNG QLPVAQSGIF PSMLSTTSTT LHNNLGTDDP SKFLNFQAPG LSSSNLQFNK  420
PNSQTHISHQ LPQPPTTLSQ QQQLQQLLQT SLNQQQQLQL QQQQQHQPLQ PRPQQQQLQP  480
QPQQQQQQQQ LQLPQQQAQA QASGQQQQHL QTNMVSAAIT SNMITPNLVV NQSFQQQQSQ  540
QLQQTHHRPF AASSSQQLSQ SSVNGTSKTS SNLTSMPQDS QFQRQVEQQP SGLLHGHSQQ  600
PLPQSLSQKA HQSQVQQILQ QGLLDQPQLQ FQLLQKLQQQ QQLLSQGSSL LQSQLLHQQL  660
QNQQQQQLPL SQGQQISSCN NSLSTSTLLQ PPQIPVSQPR EKQKTVEGVV KAYSGITDGE  720
PPSCSTSPSA NNCHDSSSNL LNRSQSGPPV LVPDAVADAS GNLVQELYSK PDIRFKQEFP  780
SSRGSDLQKI KGEASASGKT SYCLDGGNIQ QNLSAPTFCL DGDAAPSYPR NCILSGANVD  840
SFVPDAVLSR GYDSQKDLQN LLSSYGGTTN DIGTEMSTSA VRTQSFGVPN VPAISNDVVV  900
NDPRVLGGGL WANQTQRMRT YTKVQKRGSV GRSIDVNRYR GYDELRHDLA RMFGIVGQLE  960
DPQTSDWKLV YVDHENDILL VGDDPWEEFV NCVQSIKILS FTEVQQMSLD ESFVGLPVTD  1020
QACSGGGGDE GNGWRGNYDD NSAAASFNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-146829996388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541685.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541684.10.0PREDICTED: auxin response factor 7-like isoform X1
TrEMBLA0A4D9BID40.0A0A4D9BID4_SALSN; Uncharacterized protein
STRINGXP_010541684.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein