PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010541684.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 1106aa MW: 121969 Da PI: 6.6352 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.6 | 4.1e-22 | 127 | 227 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d + sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +dg+s XP_010541684.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDIHESSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDGKS- 219 99*****************************9445444.38************************************************76644. PP E..EEEEE- CS B3 90 felvvkvfr 98 +l+++++ XP_010541684.1 220 -QLLLGIRH 227 .45888775 PP | |||||||
2 | Auxin_resp | 119.9 | 2e-39 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra+++eFvv+++k+ ka++++vs+GmRf+m+fete++ rr++Gt++gvsdldp+rW+nS+Wr+L+ XP_010541684.1 253 AAHAATNNSPFTIFYNPRAAPTEFVVPLAKYTKAMYSQVSLGMRFRMMFETEECGVRRYMGTITGVSDLDPLRWKNSQWRNLQ 335 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.03E-42 | 118 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-41 | 119 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.38E-19 | 126 | 226 | No hit | No description |
SMART | SM01019 | 2.7E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.984 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-20 | 127 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-34 | 253 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.1E-9 | 973 | 1061 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.466 | 976 | 1069 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.4E-9 | 989 | 1055 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1106 aa Download sequence Send to blast |
MKAPSSNGVS PNPGGGERKA INSELWHACA GPLISVPPAG SLVVYFPQGH SEQVAASMQK 60 QTDFIPSYPN LPSKLICMLH SVTLHADPET DEVYAQMTLQ PVNKYDKDAL FASELGLKQN 120 RQPSEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELVAK DIHESSWTFR 180 HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDGKSQ LLLGIRHANR QQPALSSSVI 240 SSDSMHIGIL AAAAHAATNN SPFTIFYNPR AAPTEFVVPL AKYTKAMYSQ VSLGMRFRMM 300 FETEECGVRR YMGTITGVSD LDPLRWKNSQ WRNLQVGWDE SAAGDRPSRV SVWDIEPVLT 360 PFYICPPPFF RPKFPGQHGM PEDESDIETA LKRAMPWLGD SFDMKDSSSS SFPGLSLVQW 420 MNMQQNGQLP VAQSGIFPSM LSTTSTTLHN NLGTDDPSKF LNFQAPGLSS SNLQFNKPNS 480 QTHISHQLPQ PPTTLSQQQQ LQQLLQTSLN QQQQLQLQQQ QQHQPLQPRP QQQQLQPQPQ 540 QQQQQQQLQL PQQQAQAQAS GQQQQHLQTN MVSAAITSNM ITPNLVVNQS FQQQQSQQLQ 600 QTHHRPFAAS SSQQLSQSSV NGTSKTSSNL TSMPQDSQFQ RQVEQQPSGL LHGHSQQPLP 660 QSLSQKAHQS QVQQILQQGL LDQPQLQFQL LQKLQQQQQL LSQGSSLLQS QLLHQQLQNQ 720 QQQQLPLSQG QQISSCNNSL STSTLLQPPQ IPVSQPREKQ KTVEGVVKAY SGITDGEPPS 780 CSTSPSANNC HDSSSNLLNR SQSGPPVLVP DAVADASGNL VQELYSKPDI RFKQEFPSSR 840 GSDLQKIKGE ASASGKTSYC LDGGNIQQNL SAPTFCLDGD AAPSYPRNCI LSGANVDSFV 900 PDAVLSRGYD SQKDLQNLLS SYGGTTNDIG TEMSTSAVRT QSFGVPNVPA ISNDVVVNDP 960 RVLGGGLWAN QTQRMRTYTK VQKRGSVGRS IDVNRYRGYD ELRHDLARMF GIVGQLEDPQ 1020 TSDWKLVYVD HENDILLVGD DPWEEFVNCV QSIKILSFTE VQQMSLDESF VGLPVTDQAC 1080 SGGGGDEGNG WRGNYDDNSA AASFNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-169 | 15 | 356 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010541684.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010541684.1 | 0.0 | PREDICTED: auxin response factor 7-like isoform X1 | ||||
TrEMBL | A0A4D9BID4 | 0.0 | A0A4D9BID4_SALSN; Uncharacterized protein | ||||
STRING | XP_010541684.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2629 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20730.2 | 0.0 | ARF family protein |