PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541684.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 1106aa    MW: 121969 Da    PI: 6.6352
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541684.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.64.1e-22127227198
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d +  sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +dg+s 
  XP_010541684.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDIHESSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDGKS- 219
                     99*****************************9445444.38************************************************76644. PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                      +l+++++ 
  XP_010541684.1 220 -QLLLGIRH 227
                     .45888775 PP

2Auxin_resp119.92e-39253335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra+++eFvv+++k+ ka++++vs+GmRf+m+fete++  rr++Gt++gvsdldp+rW+nS+Wr+L+
  XP_010541684.1 253 AAHAATNNSPFTIFYNPRAAPTEFVVPLAKYTKAMYSQVSLGMRFRMMFETEECGVRRYMGTITGVSDLDPLRWKNSQWRNLQ 335
                     79*******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.03E-42118256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-41119242IPR015300DNA-binding pseudobarrel domain
CDDcd100177.38E-19126226No hitNo description
SMARTSM010192.7E-23127229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.984127229IPR003340B3 DNA binding domain
PfamPF023622.7E-20127227IPR003340B3 DNA binding domain
PfamPF065071.4E-34253335IPR010525Auxin response factor
PfamPF023098.1E-99731061IPR033389AUX/IAA domain
PROSITE profilePS5174527.4669761069IPR000270PB1 domain
SuperFamilySSF542775.4E-99891055No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MKAPSSNGVS PNPGGGERKA INSELWHACA GPLISVPPAG SLVVYFPQGH SEQVAASMQK  60
QTDFIPSYPN LPSKLICMLH SVTLHADPET DEVYAQMTLQ PVNKYDKDAL FASELGLKQN  120
RQPSEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELVAK DIHESSWTFR  180
HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDGKSQ LLLGIRHANR QQPALSSSVI  240
SSDSMHIGIL AAAAHAATNN SPFTIFYNPR AAPTEFVVPL AKYTKAMYSQ VSLGMRFRMM  300
FETEECGVRR YMGTITGVSD LDPLRWKNSQ WRNLQVGWDE SAAGDRPSRV SVWDIEPVLT  360
PFYICPPPFF RPKFPGQHGM PEDESDIETA LKRAMPWLGD SFDMKDSSSS SFPGLSLVQW  420
MNMQQNGQLP VAQSGIFPSM LSTTSTTLHN NLGTDDPSKF LNFQAPGLSS SNLQFNKPNS  480
QTHISHQLPQ PPTTLSQQQQ LQQLLQTSLN QQQQLQLQQQ QQHQPLQPRP QQQQLQPQPQ  540
QQQQQQQLQL PQQQAQAQAS GQQQQHLQTN MVSAAITSNM ITPNLVVNQS FQQQQSQQLQ  600
QTHHRPFAAS SSQQLSQSSV NGTSKTSSNL TSMPQDSQFQ RQVEQQPSGL LHGHSQQPLP  660
QSLSQKAHQS QVQQILQQGL LDQPQLQFQL LQKLQQQQQL LSQGSSLLQS QLLHQQLQNQ  720
QQQQLPLSQG QQISSCNNSL STSTLLQPPQ IPVSQPREKQ KTVEGVVKAY SGITDGEPPS  780
CSTSPSANNC HDSSSNLLNR SQSGPPVLVP DAVADASGNL VQELYSKPDI RFKQEFPSSR  840
GSDLQKIKGE ASASGKTSYC LDGGNIQQNL SAPTFCLDGD AAPSYPRNCI LSGANVDSFV  900
PDAVLSRGYD SQKDLQNLLS SYGGTTNDIG TEMSTSAVRT QSFGVPNVPA ISNDVVVNDP  960
RVLGGGLWAN QTQRMRTYTK VQKRGSVGRS IDVNRYRGYD ELRHDLARMF GIVGQLEDPQ  1020
TSDWKLVYVD HENDILLVGD DPWEEFVNCV QSIKILSFTE VQQMSLDESF VGLPVTDQAC  1080
SGGGGDEGNG WRGNYDDNSA AASFNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691535645388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541684.10.0PREDICTED: auxin response factor 7-like isoform X1
TrEMBLA0A4D9BID40.0A0A4D9BID4_SALSN; Uncharacterized protein
STRINGXP_010541684.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26292665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein