PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541600.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 181aa    MW: 20352.8 Da    PI: 9.7699
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.7e-13643142
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeA 42
                    ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae A
  XP_010541600.1  6 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAA 43
                    59*****999.**********8.....334**********6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.78E-22658No hitNo description
PfamPF008477.9E-7743IPR001471AP2/ERF domain
SMARTSM003801.7E-21763IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-19757IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-12757IPR016177DNA-binding domain
PROSITE profilePS5103215.488772IPR001471AP2/ERF domain
PRINTSPR003675.9E-9819IPR001471AP2/ERF domain
PRINTSPR003675.9E-93046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVQNAKKFRG VRQRQWGSWV SEIRHPLLKR RVWLGTFETA EAAGRGXHGQ NAKTNFPAGK  60
SDGSHQTDVN SPVMSHKALS ELLNAKLRRS CKDKAAPSLT CLRLDTDSSH IGVWQKRAGS  120
KPSSNWVMRV QLGAFDNARA DSKKKQNDDV EEEEEDGMAM QMMIEELLNW GCPNLLPFES  180
N
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541600.11e-132PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor SHINE 2
SwissprotQ3E9582e-73SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLV4K3L43e-72V4K3L4_EUTSA; Uncharacterized protein
STRINGXP_010541600.11e-132(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.28e-76ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]