PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541588.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 419aa    MW: 46078.1 Da    PI: 5.7295
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.7e-083563892154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_010541588.1 356 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 389
                     469*****************************87 PP
2ELK28.82.7e-10310331122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_010541588.1 310 ELKHELKQGYKEKIVDIREEIL 331
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-20146190IPR005540KNOX1
PfamPF037904.1E-18148189IPR005540KNOX1
SMARTSM012568.0E-30201256IPR005541KNOX2
PfamPF037912.1E-21205255IPR005541KNOX2
PfamPF037899.7E-7310331IPR005539ELK domain
SMARTSM011886.1E-4310331IPR005539ELK domain
PROSITE profilePS512139.969310330IPR005539ELK domain
PROSITE profilePS5007111.726330393IPR001356Homeobox domain
SMARTSM003892.4E-11332397IPR001356Homeobox domain
SuperFamilySSF466894.28E-16332396IPR009057Homeodomain-like
CDDcd000862.48E-11333394No hitNo description
Gene3DG3DSA:1.10.10.602.5E-25337394IPR009057Homeodomain-like
PfamPF059201.2E-17350389IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAFHLSHDTS FNHFSDQSQP QPPTQPQPPQ TQTQTQHFQE ATPPPNWLNT ALLRSSDTNF  60
LNLHTSVAAN SDSPSSAAAA TNQWLSRSSS SLLQRTNAGV VAGDVIDDVG GGGGEAETMI  120
GGEMKGGGEK TESGGGGEGA ENWQNARCKA EILSHPLYEQ LLSAHVACLR IATPVDQLPR  180
IDAQLAQSQH VVSKYSALGA AQGLIGDDKE LDQFMTHYVL LLCSFKEQLQ QHVRVHAMEA  240
VMACWEIEQS LQSLTGVSPG EGTGATMSDD EDEQVESDAN IYDGSLDGLG FGPLIPTESE  300
RSLMERVRQE LKHELKQGYK EKIVDIREEI LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP  360
TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSTV SKNKRKSNAG DKIAAERFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12333397872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541588.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529660.0AK352966.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541588.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLR0HAQ00.0R0HAQ0_9BRAS; Uncharacterized protein
STRINGXP_010541588.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]