PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010541468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 422aa MW: 48474.4 Da PI: 5.201 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.9 | 2e-12 | 372 | 420 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r+ WT eE + l ++vk++G+ Wk+I + + +Rt+ ++k++w+++ XP_010541468.1 372 RKGWTREEVQTLREGVKEYGKS-WKAIKEAYPelfANRTPVDLKDKWRNL 420 667*****************88.*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.052 | 368 | 422 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.74E-13 | 369 | 421 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-7 | 371 | 422 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-11 | 372 | 420 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-13 | 372 | 420 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 7.76E-17 | 375 | 421 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MDADGDKVID KWVCEFVLRR QQNPRVCGKR LLSTLRLEED DGCTTLKKSA VLRDIWNRLI 60 QGIVDERILD LLELFEKLQL HEGSAILESL KSAYCWAAAE CTVRYMLAVD AVEAFLYWEA 120 LQRIWDLRIG LLNERDSVLV TQELIDWGYN LKNAIDDSEL YQRLRQINTR YFAISYLCEF 180 VKEHWVLVGS PYLELEASRR FRHKGNDTNV ERNPDDVRNG ETSPRPNDAH QCPGHLEDDP 240 IDNTNGQSVF NVGQQEHEQS DNKGKPSVAQ ELKEDLLEVE ALINGLTRDG IDDDQTSEQH 300 STSVTPQRLQ AGVRGQDYNK EPENVNERAS DSEGTLSGTV RPHLPNIKSF SVSPLRKGRM 360 PKPQSSADRR LRKGWTREEV QTLREGVKEY GKSWKAIKEA YPELFANRTP VDLKDKWRNL 420 VA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00052 | PBM | Transfer from AT1G15720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010541468.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010541468.1 | 0.0 | PREDICTED: uncharacterized protein LOC104814922 | ||||
STRING | XP_010541468.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7720 | 17 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 1e-109 | TRF-like 5 |