PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541362.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 479aa    MW: 52846.7 Da    PI: 7.4116
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17161210155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_010541362.1 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDQAAIKFRG 210
                     78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.60E-13161220No hitNo description
SuperFamilySSF541716.54E-16161220IPR016177DNA-binding domain
PfamPF008479.5E-10161210IPR001471AP2/ERF domain
SMARTSM003809.1E-32162224IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-17162218IPR001471AP2/ERF domain
PROSITE profilePS5103217.899162218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MLDLNLEVGS AESIQEGADS ARDKGISGVV SNQMDESVTS NSSVVNADGT NCVDGEEESC  60
STRAVTFHFD ILKGGDREGE AEKEVVMTKE LFPVTGGNGN GRGCLISEQQ SCKNSVDISF  120
QSWKQAGEIL GHGVGGGAKR EMQQTSRPVK KSRRGPRSKS SQYRGVTFYR RTGRWESHIW  180
DCGKQVYLGG FDTAHAAARA YDQAAIKFRG LDADINFSVS DYEDDTKRMA NLTKEEFVQI  240
LRRQSTGFSR GGSRYQGAKF GRAYDKAAIE WNERNATANI EARAYQMIPE ASNRAHVKLD  300
LNLGISPPVG NYPQQNERSL QLHRDHTDIV GGWDSKVHSP TYTSLLYFIL ENRMAVAVHN  360
PPFDFLKRGS DHPIPWNASP YPCFSAEERK LEEGIVESRS RQQTFPTRIW QAQSQPLLGN  420
AASSGFSVSA TPFSSTASFL PPRPFSNLTL FGLYLASPST AGNTSHPYHH LMQPPHPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00616PBMTransfer from AT5G60120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541362.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541361.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2 isoform X1
RefseqXP_010541362.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2 isoform X1
SwissprotQ9LVG21e-148TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLE4MWP91e-156E4MWP9_EUTHA; mRNA, clone: RTFL01-19-B14
TrEMBLV4LIS41e-156V4LIS4_EUTSA; Uncharacterized protein
STRINGXP_010541361.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.21e-138target of early activation tagged (EAT) 2