PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010541352.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 265aa MW: 28817.8 Da PI: 8.4686

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010541352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.3	4.4e-40	48	109	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e++lkcprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rkn++sss XP_010541352.1 48 PEQSLKCPRCDSANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNRRSSS 109 68999*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.5E-33	50	106	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-26	51	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.404	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDPSAHHQEL FGNYKALEAM SSVSCSSNSQ RQTQTQDHQQ KKPRPQPPEQ SLKCPRCDSA 60 NTKFCYYNNY SLSQPRYFCK SCRRYWTKGG TLRNIPVGGG CRKNRRSSSS TSRLRTTSDL 120 THDAKTLSSA SYGGYNDQID LGMAFALLRK QPLESQLGFP TEFGSSFVGD VLGNSGMMGQ 180 NGGGAAESSG FAFGNANAGS LDQVAADPNR ALWGYPWQMN GESLGTMNLG GVDYHHIDSG 240 REIWSGDNAI TSSSWHGLLN SGALI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010541352.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269\|PubMed:20220754, ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010541352.1	0.0	PREDICTED: dof zinc finger protein DOF5.3
Swissprot	Q84TE9	5e-89	DOF53_ARATH; Dof zinc finger protein DOF5.3
TrEMBL	V4LR30	7e-97	V4LR30_EUTSA; Uncharacterized protein
STRING	XP_010541352.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6132	18	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-66	TARGET OF MONOPTEROS 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]