PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010541267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27884.5 Da PI: 8.6398 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.5 | 7.4e-42 | 5 | 135 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ++GfrF P ++el+++yL++k+eg+ ++++vi+ vd++++eP +Lp+ ++++++++w+fF+kr++++a+g r++r+t+sgyWkatg+ + XP_010541267.1 5 QVGFRFYPIEDELISFYLRNKLEGHLvGTMARVIPVVDVFELEPDQLPQlageRCRGDREQWFFFVKRQEREARGGRPSRTTASGYWKATGSPGP 99 68***********************94344567**************9656766666888*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s++++++g+kkt+vfy+grap+g+kt+W m+ey+ XP_010541267.1 100 VFSSDNRVIGVKKTMVFYTGRAPTGRKTKWKMNEYK 135 ***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-44 | 4 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.217 | 4 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-22 | 6 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEEIQVGFRF YPIEDELISF YLRNKLEGHL VGTMARVIPV VDVFELEPDQ LPQLAGERCR 60 GDREQWFFFV KRQEREARGG RPSRTTASGY WKATGSPGPV FSSDNRVIGV KKTMVFYTGR 120 APTGRKTKWK MNEYKAIDGI ANMPTIPKLR HEFSLCRLYV TSGSSRAFDR RPMEAYQMEG 180 MLLSNGAEPS SRARMMGERA SSSETSYSRG DHADLPENNT TQTNSAMVDG LTQPFWEWEQ 240 LNWA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-27 | 7 | 166 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-27 | 7 | 166 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-27 | 7 | 166 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-27 | 7 | 166 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-27 | 7 | 166 | 20 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-27 | 7 | 166 | 20 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010541267.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010541267.2 | 0.0 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-114 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | V4KW25 | 1e-120 | V4KW25_EUTSA; Uncharacterized protein | ||||
STRING | XP_010541267.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-121 | NAC domain containing protein 61 |
Publications ? help Back to Top | |||
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