PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541155.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 317aa    MW: 35936.4 Da    PI: 7.0031
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.4e-36281202103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+ll++
  XP_010541155.1  28 FLTKTYQLVDDPTTDHIVSWGDDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLCE 113
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_010541155.1 114 IHRRKTA 120
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3818112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-6024117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.25E-3425117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.2E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-3228117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MATMMMMESY GGERVVETAE GKAVPAPFLT KTYQLVDDPT TDHIVSWGDD DSTFVVWRPP  60
EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVPDRWEFAN EFFKRGEKHL LCEIHRRKTA  120
QPPPPQQQPP FPHHHHHHPP PPPLQFSGPT FFPFPPRAAD DVDLVGAYWC DSPPQPRQPT  180
VHHHISGGGD NAAAAAAYDR QVTALTEDNE RLRRSNSVLM SELAHMKKLY NDIIYFVQNH  240
VKPVSPSNSF PSSLLLDHHN LNPAQKPLSN QPDLGRSGPN FGSNMSGPAD RNLGPPDQLG  300
LVVRLWALIP NREEFSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-222411926131Heat shock factor protein 1
5d5v_B3e-222411926131Heat shock factor protein 1
5d5v_D3e-222411926131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541155.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541155.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-113HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLR0ILZ31e-116R0ILZ3_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010541155.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-101heat shock transcription factor B4