PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010540898.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 39896.4 Da PI: 6.2453 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.1 | 1.5e-48 | 10 | 159 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....................vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lppGfrFhP+deelv++yL++k+++k ++ ++ + e+d++++ePw+Lp +k + kewyfFs rd+kya g r+n XP_010540898.1 10 LPPGFRFHPSDEELVCHYLRNKIRAKFNHHHDgggddddgheddaeanmknnDLVEIDLHTCEPWQLPDVAKLNVKEWYFFSFRDRKYAVGYRTN 104 79**********************999666556777778888888888887559**************8778899******************** PP NAM 76 ratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 rat sgyWkatgkd+ v++ +++ vg++ktLvfy++rap+g kt+W+mhe+rle XP_010540898.1 105 RATVSGYWKATGKDRMVVDPrTRQIVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 159 ******************9956777***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-53 | 8 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.139 | 10 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-27 | 11 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGLKDIGAKL PPGFRFHPSD EELVCHYLRN KIRAKFNHHH DGGGDDDDGH EDDAEANMKN 60 NDLVEIDLHT CEPWQLPDVA KLNVKEWYFF SFRDRKYAVG YRTNRATVSG YWKATGKDRM 120 VVDPRTRQIV GMRKTLVFYR NRAPNGIKTT WIMHEFRLEC PNTPPMEDWV LCRVFNKCKE 180 SQLQEEESRF VISDNNLNYA PNYTHLPRPS PPSNDMDYHH HHQIPCGWGQ MMGHHRPSSS 240 PTSSNIHHTH HHDQSMEIPC GWDQMMETLS SSSGHCPQAH ESLLNMFYHS GVINVASTER 300 CDNEDNYKGM FSDMGLEKAC IGSSSSDILL ENDGLGFEID NTTADFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-43 | 10 | 182 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-43 | 10 | 182 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-43 | 10 | 182 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-43 | 10 | 182 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-43 | 10 | 182 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-43 | 10 | 182 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010540898.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010540898.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 6e-55 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
Swissprot | Q9S851 | 1e-54 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A0A7DNN5 | 1e-125 | A0A0A7DNN5_BRANA; NAC transcription factor 74-2 | ||||
TrEMBL | A0A397L788 | 1e-125 | A0A397L788_BRACM; Uncharacterized protein | ||||
STRING | XP_010540898.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3436 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 1e-120 | NAC domain containing protein 74 |