PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010540778.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LSD | ||||||||
Protein Properties | Length: 153aa MW: 15592.1 Da PI: 7.7276 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 46.1 | 8.2e-15 | 36 | 60 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP GA+sV+Ca+C++V XP_010540778.1 36 CSGCRNLLMYPVGATSVCCAVCNAV 60 ************************9 PP | |||||||
2 | zf-LSD1 | 46.7 | 5.2e-15 | 75 | 99 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_010540778.1 75 CGGCHTLLMYIRGATSVQCSCCHTV 99 ************************9 PP | |||||||
3 | zf-LSD1 | 39.8 | 7.4e-13 | 113 | 137 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C +V XP_010540778.1 113 CGNCRMLLMYQYGATSVKCAVCSFV 137 **********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.6E-14 | 33 | 63 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-11 | 36 | 60 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.5E-15 | 72 | 101 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-12 | 75 | 99 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.4E-11 | 110 | 138 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.8E-12 | 113 | 137 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MPVPLAPYPT PPAPYTPPPP ATNGAGGGGG QSQLVCSGCR NLLMYPVGAT SVCCAVCNAV 60 TAVPPPGTEM AQLVCGGCHT LLMYIRGATS VQCSCCHTVN LALEANQVAH VNCGNCRMLL 120 MYQYGATSVK CAVCSFVTPV GASTSTSEQK FSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010540778.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010540778.1 | 1e-105 | PREDICTED: protein LOL1-like | ||||
Swissprot | Q93ZB1 | 9e-79 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2C9UHS8 | 2e-87 | A0A2C9UHS8_MANES; Uncharacterized protein | ||||
STRING | XP_010540778.1 | 1e-104 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7293 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-65 | lsd one like 1 |
Publications ? help Back to Top | |||
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