PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010540682.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1122aa MW: 122259 Da PI: 7.972 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 23.9 | 8.9e-08 | 329 | 347 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+++CH GpC+pC+ XP_010540682.1 329 CGRHRCERTCHVGPCDPCQ 347 ******************6 PP | |||||||
2 | zf-NF-X1 | 21.1 | 6.9e-07 | 451 | 468 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C + CH G+Cp C XP_010540682.1 451 CGLHSCDEVCHAGDCPRC 468 ****************99 PP | |||||||
3 | zf-NF-X1 | 18.6 | 4.1e-06 | 548 | 566 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC XP_010540682.1 548 CGQHSCESLCHSGHCPPCL 566 ******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 7.77E-7 | 152 | 222 | No hit | No description |
PROSITE profile | PS50016 | 8.796 | 159 | 220 | IPR019787 | Zinc finger, PHD-finger |
PROSITE profile | PS50089 | 9.376 | 162 | 218 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS01359 | 0 | 162 | 217 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 8.02E-5 | 251 | 312 | No hit | No description |
SMART | SM00438 | 0.023 | 274 | 292 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.4 | 276 | 291 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.21E-12 | 319 | 367 | No hit | No description |
SMART | SM00438 | 4.0E-5 | 329 | 348 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.4E-6 | 329 | 346 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.71E-9 | 383 | 425 | No hit | No description |
SMART | SM00438 | 3.8E-4 | 393 | 412 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 3.8E-4 | 393 | 410 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.70E-13 | 441 | 489 | No hit | No description |
SMART | SM00438 | 6.2E-5 | 451 | 470 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 2.5E-5 | 451 | 468 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 100 | 509 | 540 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 19 | 509 | 520 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.76E-8 | 538 | 579 | No hit | No description |
SMART | SM00438 | 2.0E-4 | 548 | 567 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.0E-4 | 548 | 565 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.75E-5 | 595 | 642 | No hit | No description |
SMART | SM00438 | 0.045 | 605 | 623 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 2.3 | 605 | 622 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0089 | 658 | 688 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.015 | 658 | 673 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.11E-5 | 686 | 735 | No hit | No description |
Pfam | PF01422 | 11 | 690 | 716 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.021 | 697 | 718 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1122 aa Download sequence Send to blast |
MSSQVRRDRR ERPRFGPQGS RQTWVPRGAS TSVVVNEPLI ASNPDGNSSS FDANSAPSPV 60 NQPRRNNSPG LIPDNHNTGN TELGPPLVNR HHRQRRNNGS RQGPPPDNRQ RVGSRGHFAR 120 HVTQERATER GDNIDVVRSK DPNLPQLVQE IEDKLMKGAV ECMICYDMVR RSANIWSCSS 180 CYSIFHLNCI KRWARAPTSV DLAAEKDQGF NWRCPGCQSV QLTSSKEISY RCFCGKRKDP 240 PADPYLTPHS CGEPCGKLLE KEFAGTETSK EYHCPHVCVL QCHPGPCPPC KAFAPPRYCP 300 CGKKIITTRC SERRSVSTCG QPCDKLLGCG RHRCERTCHV GPCDPCQVLV NASCFCKKKA 360 EVVICGDMSI KGVVKAEDGV FSCSLTCGRL LGCGNHNCRE MCHPGPCGDC DLLPSMIKTC 420 YCGKTGLEEQ RCSCLDPIPS CPNICGKLLP CGLHSCDEVC HAGDCPRCLI KVNQKCRCGS 480 TSRTVECYKT TSEAENFVCE KPCGRKKNCG RHRCSERCCP LSNPKNDPTP RGWDPHVCQI 540 PCGKNLRCGQ HSCESLCHSG HCPPCLEMIF TDLTCACGKI SIPPPLPCGT PPPSCQFPCS 600 VPQPCGHAAS HACHFGDCPP CSVPVEKKCI GGHVVLRNIP CGLKDIRCTK LCGKTRRCGM 660 HACARTCHPE PCDTGDETEA GVRVSCGQTC GAPKRDCRHT CAALCHPSAP CPDLRCEFPV 720 TITCSCGRIT STVPCDAGGR SVDGFSADSL YEASVLQKLP VPLQPVETSG NRVPFGQRKL 780 TCDDECAKLD RKRVLQDAFD ITPPNLDALH FGENPAMTEI ISDLYRRDPK WVLAVEERCK 840 FLVLGKSRGN ASALKLHVFC PMQKDKRDAI RLIAERWKLA VNTAGWEPRR FTVIHVTPKS 900 KPPSRIIGVK GSVSLGTLHP PAFDPLVDMD PRLVVSLLDL PREANISGLV LRFGGECELV 960 WLNDKNAVAV FHDPARAATA MRRLDHGSVY QGAMAVQNVG QSSQASHAWG GIHGREGQRG 1020 GNPWKKALIH DDSWGPDDSP TVSSAREISK GNTPMVETLN RWSVLESGKD NTSVSAGNLD 1080 HKADETMVGV GGSSSSKEVG DLHVGGSVGD EDVADDWEEV CD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010540682.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010540682.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL1-like | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A1J3FHQ4 | 0.0 | A0A1J3FHQ4_NOCCA; NF-X1-type zinc finger protein NFXL1 | ||||
STRING | XP_010540682.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5955 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |