PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010540604.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 653aa MW: 72453.6 Da PI: 6.601 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.7 | 3.7e-17 | 10 | 73 | 34 | 99 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F ++++ +l+++++r+ XP_010540604.1 10 QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDAVLFI--WNDKNQLLLGIRRA 73 48999*********************************************..7888889****997 PP | |||||||
2 | Auxin_resp | 117.6 | 1e-38 | 98 | 181 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+ eFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g++dldpvrWp+S+Wrs+k XP_010540604.1 98 AAHAAATNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTIMGINDLDPVRWPHSHWRSVK 181 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.956 | 1 | 74 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-25 | 2 | 87 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-26 | 2 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.0E-4 | 3 | 74 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-14 | 9 | 73 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.67E-12 | 10 | 72 | No hit | No description |
Pfam | PF06507 | 1.2E-33 | 98 | 181 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.1E-8 | 505 | 605 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.2E-7 | 510 | 592 | No hit | No description |
PROSITE profile | PS51745 | 24.501 | 517 | 601 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MDFTQQPPAQ ELIARDLHDN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL IAGDAVLFIW 60 NDKNQLLLGI RRANRPQTVM PSSVLSSDSM HLGLLAAAAH AAATNSRFTI FYNPRASPCE 120 FVIPLAKYVK AVYHTRVSVG MRFRMLFETE ESSVRRYMGT IMGINDLDPV RWPHSHWRSV 180 KVGWDESTAG EKQPRVSLWE IEPLTTFPMY PSPFPLRLKR PWPPGLPSFH VSSIKEDDLG 240 MMSSPLMWDR GLQTLNFQGF GLNPWTMMQQ PRLDVYQTMA ASALQDTNFS TRPVPENQQP 300 QSLQTQTPAN NLLSQQTQFV SGSQSIPPLC HHLSFSDTNC IGNNPMTSSI VSPLHTLLGN 360 FPQDESSSSH QMLNLTRSSS AMASSGWPSK RAAVDSSFQS SGSRNNSNNN TECVMDQLPP 420 FPGRECLAEQ DGNTDPHSHL LFGVSIDSSS LLMQSGVSNL NAIGIENDST ALPFLSSNTV 480 SINDFSSNLA VMPSSCIDES GFLQSSDNVG SENPQSTTFV KVYKSGSFGR SLDISKFSSY 540 HELRSELARM FGIEGRLEDP MRSGWQLVFV DRENDVLLLG DDPWPEFVNS VWCIKILSPQ 600 EVHRMGKRGI EILSSGPSVR KIPNGGGCED FGNGHDPRNL GGSIASVAGS FDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-88 | 1 | 202 | 187 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010540604.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010540601.1 | 0.0 | PREDICTED: auxin response factor 6-like isoform X1 | ||||
Refseq | XP_010540602.1 | 0.0 | PREDICTED: auxin response factor 6-like isoform X1 | ||||
Swissprot | Q9ZTX8 | 1e-173 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A3P6EVZ4 | 0.0 | A0A3P6EVZ4_BRAOL; Auxin response factor | ||||
STRING | XP_010540601.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 1e-174 | auxin response factor 6 |