PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010540590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 453aa MW: 49326.6 Da PI: 7.0724 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.5 | 1.6e-36 | 67 | 212 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssas 83 g+kdrhsk+ T++g+RdRR+Rls+++a++f+dLqd+LG+d++sk++eWLl +a ai +l++ s+ ++e XP_010540590.1 67 SGGKDRHSKVLTSKGPRDRRIRLSVSTAIQFYDLQDRLGLDQPSKAVEWLLHAATDAIADLPSInafpdglsdermaSNGGNNEQ---------- 151 689*************************************************************555554443333211111111.......... PP TCP 84 nsssg.................kaaksaa.kskksqksaasalnlak.esrakarararertrekmri 132 + + ++a +s +++++++sal+l++ e r kar+rarert++++ XP_010540590.1 152 ----ElgdfegqnhnmnqtlslS---KSAcSSTSETSKNSSALSLSRsEIRGKARERARERTAKEKER 212 ....1223333334455665332...333244455555555699999899**********87765544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.6E-39 | 68 | 211 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.393 | 69 | 127 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.926 | 192 | 210 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MEVDDVQTQQ PSRKLPRFSN EVDADGGGLA RRADNSGDGD DEGMNNSLSL RSSWNPSSRI 60 VRVSRASGGK DRHSKVLTSK GPRDRRIRLS VSTAIQFYDL QDRLGLDQPS KAVEWLLHAA 120 TDAIADLPSI NAFPDGLSDE RMASNGGNNE QELGDFEGQN HNMNQTLSLS KSACSSTSET 180 SKNSSALSLS RSEIRGKARE RARERTAKEK EREKEREREN DVVQAPTPIQ PQSSFTQLLT 240 GNHHDEASPT GNHHNRHWTG TSSVEYFSPV QLIPPSSFSR THQAYNGPIH AGISPLPHFS 300 PFTISGENHH HHHHQEPLQS QHFSFLPPES LIQTAGSAAT ADYSTLNFSI SSPAAVAGGG 360 GVSGYNRGTL QSNSPSLFLN NNIQRFSPSS TTSSASSSSP MDSQSVPFFT ATPSLEHHHH 420 GHQIPATFDG RLYLYHGGDG GRCPDQKQGK GRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 74 | 128 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 74 | 128 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00169 | DAP | Transfer from AT1G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010540590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010540590.1 | 0.0 | PREDICTED: transcription factor TCP24 | ||||
Refseq | XP_010540591.1 | 0.0 | PREDICTED: transcription factor TCP24 | ||||
TrEMBL | A0A200Q1C1 | 6e-91 | A0A200Q1C1_9MAGN; Transcription factor | ||||
STRING | XP_010540589.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-38 | TCP family protein |