PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540512.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 188aa    MW: 20751.4 Da    PI: 10.3262
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540512.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.27.5e-3872131261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+++cprC+s +tkfCy+nny+++qPr+fC++C+ryWt+GG+lrnvPvG+grrk + +
  XP_010540512.1  72 PDKIIPCPRCKSVETKFCYFNNYNVNQPRHFCRGCQRYWTAGGTLRNVPVGAGRRKTRPT 131
                     68999***************************************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2871129IPR003851Zinc finger, Dof-type
PfamPF027013.9E-3174129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.08176130IPR003851Zinc finger, Dof-type
PROSITE patternPS01361078114IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MATQDSKGIK LFGKTITFHG NINTQATKTG HTTETTTKTE HILAQTTART EEQKRSTSVK  60
SDLTTAAVEK RPDKIIPCPR CKSVETKFCY FNNYNVNQPR HFCRGCQRYW TAGGTLRNVP  120
VGAGRRKTRP TTGQVVAGVF SASGDHHVGL HDLLAKEWHA SAAAAVQGGF RHDFPVKRLR  180
CYSDGQSC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269|PubMed:19619493}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540512.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540512.11e-140PREDICTED: dof zinc finger protein DOF1.5-like
SwissprotP683504e-72DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBLR0HFI03e-71R0HFI0_9BRAS; Uncharacterized protein
STRINGXP_010540512.11e-139(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28092669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.19e-73Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Bueso E, et al.
    Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration.
    Plant J., 2016. 87(6): p. 583-96
    [PMID:27227784]