PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540455.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 299aa    MW: 32307.2 Da    PI: 9.6484
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540455.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.6e-394198562
          zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++
  XP_010540455.1 41 PLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 98
                    689****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.2E-334296IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5254296IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-264396IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104480IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MQSNSNDNNN SNMMVAPSLP SAGYLGGMTK ASQPQPQSQL PLKCPRCDSS NTKFCYYNNY  60
SLSQPRHFCK ACKRYWTRGG TLRNVPVGGG CRKNKRVKRR IDVSSASTTS NSSSRMNHFG  120
YVHPLLCGLS DVTGAGNNLP MASSNSKGFE SGFRFNGLGD LGLGFPNIGD HMINLDSATK  180
KPFFSGLFGS LSSSSTSSMA ALLAYSTSHP QKFINGGHHI PRNSEILGRN NLQTLASPQD  240
FHVNEAEIVM NKEGKPDHQI QSSGYIGLSY ADPSSFNTNA VGAWLDPTTN VVYSLTSLI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540455.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540455.10.0PREDICTED: dof zinc finger protein DOF1.4-like
SwissprotQ9FZA42e-57DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A078JJD94e-62A0A078JJD9_BRANA; BnaCnng51540D protein
TrEMBLA0A0D3D6964e-62A0A0D3D696_BRAOL; Uncharacterized protein
STRINGXP_010540455.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.12e-51Dof family protein