PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540440.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 348aa    MW: 38035.4 Da    PI: 5.6714
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.71.6e-2856153186
        trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                     rWt+qe+l+Li+++r  e+r+rrg+            + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e++s +++ +
  XP_010540440.1  56 RWTRQEILVLIQGKRVAENRVRRGRavgsgmglgspgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIKDETESFWVMRN 150
                     8**********************98888899999999***********************************************999999*9999 PP

        trihelix  84 qle 86 
                     +l+
  XP_010540440.1 151 DLR 153
                     986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2656125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-456124IPR009057Homeodomain-like
PfamPF138373.2E-1156148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAQEQLSLGT SAVDGDANGV IYVAGGGGRG ESRVSAKNDG GSGGGDDGIK TARLPRWTRQ  60
EILVLIQGKR VAENRVRRGR AVGSGMGLGS PGQVEPKWAS VSSYCKRHGV NRGPVQCRKR  120
WSNLAGDFKK IKEWESQIKD ETESFWVMRN DLRRERKLPG FFDKEVYDIL DGGAIPPAVA  180
VEAALVLALA PASTSVEKSE PVFDSGRSTA AEEGLFSDFV EQEEPAKAIP TAVPLSVSEK  240
DYQAASGAGK TNERRPEKNA EADSTSQEQR KRKRQEEPDK QEEEEEANSM QHQLIDVLER  300
SGKMLATQLE AQNSNLRQDR EQRKDFGDSL VAVLNKLADA LGRIADKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540440.10.0PREDICTED: trihelix transcription factor ASR3-like
SwissprotQ8VZ201e-136ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1J3E8P91e-139A0A1J3E8P9_NOCCA; Uncharacterized protein
TrEMBLA0A1Q3BVU81e-139A0A1Q3BVU8_CEPFO; Myb_DNA-bind_4 domain-containing protein
STRINGXP_010540440.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-120Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]