PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010540431.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 22239.3 Da PI: 6.1619 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.6 | 4.9e-21 | 85 | 133 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp + + +r++lg+f+taeeAa a+++a+ +++g XP_010540431.1 85 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEEAASAYDKAAFRFRG 133 9*******.**********9...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-14 | 84 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-38 | 84 | 147 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.91E-35 | 84 | 142 | No hit | No description |
SuperFamily | SSF54171 | 4.77E-23 | 84 | 142 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-33 | 84 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.093 | 84 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-12 | 85 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-12 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MHGKRPLSRE ESDQGKGSEQ VKHNDDLCSI SCSSTLSESD VSALVSELSQ AIQTNDQSVS 60 VPYPYPFVIP EHGREEDHIQ IQRNYRGVRQ RPWGKWAAEI RDPNKAARVW LGTFDTAEEA 120 ASAYDKAAFR FRGNRAKLNF PERIDHQTTA GEENPSDHSS SSSLVVTNID NVVGPTIMAS 180 SFSDEYYEKD VNGHKRRK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-27 | 83 | 144 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-27 | 83 | 145 | 4 | 67 | ATERF1 |
3gcc_A | 2e-27 | 83 | 145 | 4 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00289 | DAP | Transfer from AT2G33710 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010540431.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010540431.1 | 1e-148 | PREDICTED: ethylene-responsive transcription factor ERF112 | ||||
Swissprot | P93007 | 7e-46 | EF112_ARATH; Ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | V4MA18 | 6e-48 | V4MA18_EUTSA; Uncharacterized protein | ||||
STRING | XP_010540431.1 | 1e-147 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33710.1 | 1e-30 | ERF family protein |