PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540420.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 434aa    MW: 47843.6 Da    PI: 4.6862
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.32.4e-061352437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     +C+ ++e  + lfC+ +   lC  C ++ H        H
  XP_010540420.1 13 VTCDFCGERTAVLFCRADTAKLCLLCDQHVHAAnllsrkH 52
                    68*******9*******************99545555555 PP
2zf-B_box23.61.1e-075586334
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                     ++C+++++++++  C++++ +lC++C   +H
  XP_010540420.1 55 SQICDNCGNEPVSVRCFTDNLFLCQKCDWDGH 86
                    689************************99999 PP
3CCT64.23.8e-22386430145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     R +a++RYkeK+k+R+++K+irYesRKa+A++R RvKGrFvk++e
  XP_010540420.1 386 RGNAMQRYKEKKKNRRYDKTIRYESRKARADTRMRVKGRFVKASE 430
                     7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.9E-131057IPR000315B-box-type zinc finger
PROSITE profilePS501199.571057IPR000315B-box-type zinc finger
CDDcd000218.84E-101557No hitNo description
CDDcd000212.06E-85786No hitNo description
SMARTSM0033625894IPR000315B-box-type zinc finger
PfamPF062036.6E-17386428IPR010402CCT domain
PROSITE profilePS5101714.882386428IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MNMGTSRNSS GSVTCDFCGE RTAVLFCRAD TAKLCLLCDQ HVHAANLLSR KHVRSQICDN  60
CGNEPVSVRC FTDNLFLCQK CDWDGHGSCS VSSVEGFSGC PSAVELAAVW GLDLVGRKGE  120
EEEEEEEVPL MMENFGLSLD SWVSGSNGVQ ELIVPNEFKK QSPSREKYKQ VVYEQLEELL  180
KRDLVGGDGD SDGDGDGDDG EGEGEVVMVP EIQERLGGWT EDLDGISGGA AVTEEPRTTS  240
FTSLLMYQTE QEHGSEGGNG MLWNANRSGG QSTQIWDFHS GRSRGPEEPN RLESGYVTTG  300
PTFTIKNFTN LMNETYPTNP KSFRDNCQDE SNRSTSGQGP ATSESNNLPN NNSNDLHFTD  360
QFIGSSSKTT GLAATMADPE RVAQNRGNAM QRYKEKKKNR RYDKTIRYES RKARADTRMR  420
VKGRFVKASE APFT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540419.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
RefseqXP_010540420.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
RefseqXP_010540421.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
RefseqXP_010540422.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
RefseqXP_010540423.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
RefseqXP_010540424.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
RefseqXP_010540426.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
RefseqXP_010540427.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
RefseqXP_010540428.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15
SwissprotO228001e-159COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBLV4KVL41e-177V4KVL4_EUTSA; Uncharacterized protein
STRINGXP_010540419.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-150B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]