PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010540143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | DBB | ||||||||
Protein Properties | Length: 311aa MW: 33838.6 Da PI: 5.4251 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.3 | 2.4e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e+ C ++ lC++C ++ H H++vpl XP_010540143.1 4 QCNVCEAAEAAVLCCADEAALCRSCDEKVHAAnklagkHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 26.8 | 1.1e-08 | 53 | 90 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 +++kC+ ++e +fC +++ llC++C +++H H XP_010540143.1 53 SMPKCDICQEASGFFFCLQDRALLCRKCDVAIHTAntH 90 689********9********************955553 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.466 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.22E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.7E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.7E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.973 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.2E-6 | 53 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.61E-8 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MKIQCNVCEA AEAAVLCCAD EAALCRSCDE KVHAANKLAG KHQRVPLSGY SSSMPKCDIC 60 QEASGFFFCL QDRALLCRKC DVAIHTANTH VSSHQRFLLT GIRVELESSD SVPSSSSAAK 120 SQSNGKTTGT KSSPAVYGAA EPQKMSLVYD HPQGAADSVD DFILTKAPFP SSGSAAGSIP 180 QWQLDDILGL TDFDQSFEYI DNNRLTKADT SRRGDSDSSS MMRSAAAEEE EDEMEDEECV 240 GKETYESSWA VPEIPSPPTA SGLNWPKSYY PRRGHSDVVF VPDISSTSSV QTCSVSSYPS 300 RRVGKRRRRR F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 304 | 309 | KRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010540143.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010540143.1 | 0.0 | PREDICTED: B-box zinc finger protein 22-like | ||||
Swissprot | Q9SYM2 | 1e-119 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A1J3FWL5 | 1e-133 | A0A1J3FWL5_NOCCA; B-box zinc finger protein 22 | ||||
STRING | XP_010540143.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5606 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 2e-81 | light-regulated zinc finger protein 1 |