PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010540079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NF-YA | ||||||||
Protein Properties | Length: 307aa MW: 34153.1 Da PI: 9.5404 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 83.7 | 3e-26 | 141 | 202 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpyl.....heSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+++kl +ksrk + +eSRh hAl+RpRgsgGrF XP_010540079.1 141 NEPVFVNAKQYHAILRRRQQRAKQEAQNKL-IKSRKLPMfmaggYESRHIHALKRPRGSGGRF 202 59****************************.88887544356668*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.0E-29 | 139 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 30.265 | 140 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.2E-21 | 142 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.3E-17 | 143 | 165 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.3E-17 | 179 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MTESLILKVD SMPKHLQNTK QMSFQDHDSS STQSTGQSYT EVASRGDSKL SRQISFSTQS 60 GYGEARDKAF VDNVRSASPT GFPDIHFAPS QAHFSLHCAE PQFGGYLTAT YAPQATVTMC 120 SPQMVGFVPS RVPLPVNLME NEPVFVNAKQ YHAILRRRQQ RAKQEAQNKL IKSRKLPMFM 180 AGGYESRHIH ALKRPRGSGG RFLNTKKLKE SEHGGAEQQM EGNKNMSRSR FEIHHHLENS 240 KEHHGSTTSC SDITSASDSA DIFGNPEFQL PDYPSEITLT RATNFRDRSG EMHGGGGGNV 300 HHFSVRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-14 | 141 | 213 | 2 | 68 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010540079.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019058082.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3 | ||||
Swissprot | Q93ZH2 | 1e-109 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | F4IEZ6 | 1e-109 | F4IEZ6_ARATH; Nuclear factor Y, subunit A3 | ||||
STRING | XP_010540079.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3349 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.2 | 2e-88 | nuclear factor Y, subunit A3 |