PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540042.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 701aa    MW: 77679.4 Da    PI: 6.72
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.8e-203691156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t++q+++Le+ F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  XP_010540042.1 36 KKRYHRHTAYQIQRLEATFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 91
                    688999***********************************************998 PP
2START154.21.1e-482214402205
                     HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     +a +a++el+++ + +ep+W++     e++n   +   f+++ +       ++ea+r sgvv+m++  lv  ++d   +W e ++      +tl+
  XP_010540042.1 221 IAVSAMEELLRLLQTNEPLWTRNDgcrEILNLGSYENMFPRASNhgknpnVRTEASRSSGVVFMNALALVDMFMDCV-KWAELFPtivaTSKTLA 314
                     67899*****************99999999999999999998889999999**************************.999999999999***** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+ssg      gal+lm+ el +lsplv+ R+f+++Ry++q +  +wv+v +S +++q+++      R+ +lpSg++i+++ ng+skvtwvehvd
  XP_010540042.1 315 VVSSGmngtheGALHLMYEELHVLSPLVAtREFYMLRYCQQIELATWVVVNISYEHPQFVSR----SRSCRLPSGCVIQDMHNGYSKVTWVEHVD 405
                     ************************************************************95....56666************************ PP

                     --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                     ++++ p h+++r ++++gla+ga +wv  lqr  e
  XP_010540042.1 406 VEEKEPvHEIYRDMIHTGLAFGAERWVTVLQRMSE 440
                     *******************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-211595IPR009057Homeodomain-like
SuperFamilySSF466896.27E-202593IPR009057Homeodomain-like
PROSITE profilePS5007117.9123393IPR001356Homeobox domain
SMARTSM003893.8E-193497IPR001356Homeobox domain
PfamPF000461.2E-173691IPR001356Homeobox domain
CDDcd000861.19E-183694No hitNo description
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PROSITE profilePS5084848.176211444IPR002913START domain
SuperFamilySSF559613.57E-32212443No hitNo description
CDDcd088754.99E-106215440No hitNo description
SMARTSM002347.2E-36220441IPR002913START domain
PfamPF018521.1E-41221440IPR002913START domain
Gene3DG3DSA:3.30.530.206.9E-9274434IPR023393START-like domain
SuperFamilySSF559612.47E-18463692No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MKMDFIVGDG NGSGSGGSHH LDGGGRGGRR EAERKKKRYH RHTAYQIQRL EATFKECPHP  60
DEKQRLQLSR ELGLAPRQIK FWFQNRRTQM KAQHERADNC ALRMENDKIR CENIAMREAL  120
KNAICPNCGG PPLSEDPYFD EQRLRIENAQ LRDELERMSS IAAKYIGRPM NISPLDLSMA  180
MGEGPSLDFD LLPGNSMVVP IQPPQPTCAL SDMDKPLMTD IAVSAMEELL RLLQTNEPLW  240
TRNDGCREIL NLGSYENMFP RASNHGKNPN VRTEASRSSG VVFMNALALV DMFMDCVKWA  300
ELFPTIVATS KTLAVVSSGM NGTHEGALHL MYEELHVLSP LVATREFYML RYCQQIELAT  360
WVVVNISYEH PQFVSRSRSC RLPSGCVIQD MHNGYSKVTW VEHVDVEEKE PVHEIYRDMI  420
HTGLAFGAER WVTVLQRMSE RFASLLVSGT SSRDLGGVIT SVEGKRSMTR LAQRMVRNFC  480
LSVSTSNNSS SVTVSGLNEV GVRVTAHKSP EPNSTVLCAA TTFWLPVSPQ NIFNFLKDER  540
NRPQWDVLSN GNAVQEVAHI ENGSHPGNCI SVLRAFNSSQ NNMLILQESC IDSSGALVVY  600
SPLELPALQI AMSGEDPLFI PLLPSGFTIS PDGNSRITTM DQGDCGSSSS FGGGSLITVA  660
FQIMVSSLSS AKLNMESVTT ANNLINTTVH QIKTALNCST A
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540042.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540042.10.0PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X1
RefseqXP_010540044.10.0PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X1
RefseqXP_010540045.10.0PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X1
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLA0A178W9A40.0A0A178W9A4_ARATH; HDG11
STRINGXP_010540042.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30042665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]