PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539990.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 375aa    MW: 42358.4 Da    PI: 6.1356
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd++l+ +v+++G g W+t +++ g++R++k+c++rw +yl
   XP_010539990.1 14 KGAWAPEEDQKLIAYVNEHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 61
                     799*******************************************97 PP
2Myb_DNA-binding582.2e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +++e++e +v++++ +G++ W++Iar+++ gRt++++k++w+++
   XP_010539990.1  67 RGEFSEEDEETIVRLHATHGNK-WSAIARRLP-GRTDNEIKNHWNTH 111
                      899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.545961IPR017930Myb domain
SuperFamilySSF466891.87E-2811108IPR009057Homeodomain-like
SMARTSM007175.4E-121363IPR001005SANT/Myb domain
PfamPF002496.2E-151461IPR001005SANT/Myb domain
CDDcd001671.28E-81661No hitNo description
PROSITE profilePS5129426.66462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2665117IPR009057Homeodomain-like
SMARTSM007171.4E-1766114IPR001005SANT/Myb domain
PfamPF002491.9E-1667111IPR001005SANT/Myb domain
CDDcd001673.04E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVRTPCCKAE GLRKGAWAPE EDQKLIAYVN EHGEGGWRTL PEKAGLKRCG KSCRLRWANY  60
LRPDIKRGEF SEEDEETIVR LHATHGNKWS AIARRLPGRT DNEIKNHWNT HIKKRLIKKG  120
IDPLTHRPIS GNSDSESSRE MQKDCPETTV EEISTRQGQD LERRKPPLSL SAKFLNKVAN  180
KFARRVNKSA LTEIIEGGGP QTNNNVINGN SVCNNNDNSI ESERERSINS STSTLNLLNK  240
ITPSRLRSIL DGECHPPSVS MSMSSASSPS VNDPLTYSLE MKMGDKLNGV WSGNDYRDIE  300
FNKFLSSIAN DEDFMGDNSR VGDIVFVNEF TGILQDDGPY DTNMMMMVNE REARIKGAFE  360
DIESYLDDYM DLENH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539990.10.0PREDICTED: transcription factor MYB51-like
TrEMBLA0A397YRF02e-95A0A397YRF0_BRACM; Uncharacterized protein
TrEMBLA0A3P6BA856e-95A0A3P6BA85_BRACM; Uncharacterized protein
TrEMBLM4DHG22e-95M4DHG2_BRARP; Uncharacterized protein
STRINGXP_010539990.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18570.13e-94myb domain protein 51