PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539976.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 278aa    MW: 31556 Da    PI: 4.9794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539976.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++lv +++++G g+W++ +r+  + R++k+c++rw++yl
   XP_010539976.1 14 KGEWTAEEDQKLVAYINEHGIGDWRSLPRKADLQRCGKSCRLRWLNYL 61
                     799*******************************************97 PP

2Myb_DNA-binding57.43.5e-1867110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+e ++++++ lG++ W++Ia++m+ +Rt++++k++w++
   XP_010539976.1  67 RGKFSADEEETIIQLHAVLGNR-WAAIAKHMQ-NRTDNDIKNHWNS 110
                      89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.173961IPR017930Myb domain
SuperFamilySSF466897.91E-3012108IPR009057Homeodomain-like
SMARTSM007176.7E-131363IPR001005SANT/Myb domain
PfamPF002493.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231568IPR009057Homeodomain-like
CDDcd001671.89E-101661No hitNo description
PROSITE profilePS5129426.33362116IPR017930Myb domain
SMARTSM007171.5E-1666114IPR001005SANT/Myb domain
PfamPF002498.7E-1767110IPR001005SANT/Myb domain
CDDcd001676.46E-1169112No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRMTWFDVD GTKKGEWTAE EDQKLVAYIN EHGIGDWRSL PRKADLQRCG KSCRLRWLNY  60
LRPGLKRGKF SADEEETIIQ LHAVLGNRWA AIAKHMQNRT DNDIKNHWNS SLKKRLARNG  120
IDPMTHEPFT VAGETPSSSS SPPATATASS SSSGSARILN KLAAGMRRQA LDLKTILSPT  180
TTTMTCHDVN GDEEKEEREK RNDETDVPMW DRDDVDVTCF MQNSSFEDET TTFNGFTTGT  240
TTTSFDWCDS LMYFDSSNSS CFYNSELYDI IDEIDRFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539976.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539976.10.0PREDICTED: transcription factor MYB34-like
TrEMBLA0A0D3CBB16e-87A0A0D3CBB1_BRAOL; Uncharacterized protein
TrEMBLA0A0N6Z0R75e-87A0A0N6Z0R7_BRANA; MYB transcription factor 47
STRINGXP_010539976.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.13e-82myb domain protein 47