PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010539976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 31556 Da PI: 4.9794 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++lv +++++G g+W++ +r+ + R++k+c++rw++yl XP_010539976.1 14 KGEWTAEEDQKLVAYINEHGIGDWRSLPRKADLQRCGKSCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.4 | 3.5e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+e ++++++ lG++ W++Ia++m+ +Rt++++k++w++ XP_010539976.1 67 RGKFSADEEETIIQLHAVLGNR-WAAIAKHMQ-NRTDNDIKNHWNS 110 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.173 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.91E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.89E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.333 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-17 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.46E-11 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRMTWFDVD GTKKGEWTAE EDQKLVAYIN EHGIGDWRSL PRKADLQRCG KSCRLRWLNY 60 LRPGLKRGKF SADEEETIIQ LHAVLGNRWA AIAKHMQNRT DNDIKNHWNS SLKKRLARNG 120 IDPMTHEPFT VAGETPSSSS SPPATATASS SSSGSARILN KLAAGMRRQA LDLKTILSPT 180 TTTMTCHDVN GDEEKEEREK RNDETDVPMW DRDDVDVTCF MQNSSFEDET TTFNGFTTGT 240 TTTSFDWCDS LMYFDSSNSS CFYNSELYDI IDEIDRFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-27 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010539976.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010539976.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
TrEMBL | A0A0D3CBB1 | 6e-87 | A0A0D3CBB1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A0N6Z0R7 | 5e-87 | A0A0N6Z0R7_BRANA; MYB transcription factor 47 | ||||
STRING | XP_010539976.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 3e-82 | myb domain protein 47 |