PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010539972.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 396aa MW: 44375.9 Da PI: 6.4026 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.5 | 8.7e-24 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr gilKKA+ELS+LCd+++ +++fs+tgk XP_010539972.1 9 KRLESTSNRQVTYSKRRSGILKKAKELSILCDIDIVLLMFSPTGK 53 689****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.4E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.553 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-27 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-20 | 11 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MGRVKLKIKR LESTSNRQVT YSKRRSGILK KAKELSILCD IDIVLLMFSP TGKPTLFHGE 60 HSGIEDVIAK FSQLTPQERT KRKLESLEAL KKTFKKLDHD VNINEFLGAR NKTAEVLSNQ 120 VAVLQAQITE IHRRLSCWGN IDRIENVEHL GQLEESLRNS VEKIQIHREN SRKNQLIPVG 180 CTSQFHCGIS LPLAMGGVQE AHSLSWLHDD DNQQIIIPGD PSFLLHRDMR STSTVPSLAV 240 YSGFFEHGKP EDQICNPGQF DNLGPEPSTL NELNRNGCLS LQFGEEYSYG NPFGSMSMQD 300 DDKKLDQGIE LNLQQDPSMY QSNTSFQFPH QPMGTSDHHH HNTWFPDSAC CSTSGFGQTS 360 YNQEEENGEV MILTCFGNCS KGINSGLGTG NFFSGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 3e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 3e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 3e-15 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010539972.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010539972.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL65 isoform X1 | ||||
Refseq | XP_010539973.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL65 isoform X1 | ||||
Refseq | XP_019058072.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL65 isoform X1 | ||||
Swissprot | Q7X9I0 | 1e-153 | AGL65_ARATH; Agamous-like MADS-box protein AGL65 | ||||
TrEMBL | V4KY08 | 1e-154 | V4KY08_EUTSA; Uncharacterized protein | ||||
STRING | XP_010539972.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5933 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-155 | AGAMOUS-like 65 |
Publications ? help Back to Top | |||
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