PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010539862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ARF | ||||||||
Protein Properties | Length: 866aa MW: 95556.5 Da PI: 6.158 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.7 | 2.5e-24 | 153 | 254 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae+ + ++++ ++l+++d++ +W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F ++++ XP_010539862.1 153 FCKTLTASDTSTHGGFSVPRRAAEKLfppldyNAQPPT-QELVVRDLHDHTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEK 244 99*********************999****99445444.49************************************************..4577 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+v+v+r+ XP_010539862.1 245 SQLMVGVRRA 254 778*****97 PP | |||||||
2 | Auxin_resp | 112.1 | 5.2e-37 | 279 | 362 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++++F+++YnPra++seFv++++k++ka+ +++svGmRf m+fet++s +rr++Gt++g+sdldp+rWp+SkWr+L+ XP_010539862.1 279 AAHATANRTPFTIFYNPRACPSEFVIPLSKYRKAICgSQLSVGMRFGMMFETDESGKRRYMGTIIGISDLDPLRWPGSKWRNLQ 362 79********************************9989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.66E-46 | 140 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.9E-43 | 146 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.44E-23 | 152 | 253 | No hit | No description |
PROSITE profile | PS50863 | 13.281 | 153 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.4E-22 | 153 | 254 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-25 | 153 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-32 | 279 | 362 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.3E-10 | 752 | 843 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.519 | 757 | 841 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.65E-7 | 770 | 836 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 866 aa Download sequence Send to blast |
MACVEDTIKT NNGLGNGGAT TQQTTLLEEM KLLKEMQDQS GTRKAVINSE LWHACAGPLV 60 SLPQVGSLVY YFPQGHSEQV AVSTRRSATT QVPNYPNLPS QLMCQVHNVT LHADKDTDEI 120 YAQMSLQPVH SERDVFPVPD FGLRTSKHPN EFFCKTLTAS DTSTHGGFSV PRRAAEKLFP 180 PLDYNAQPPT QELVVRDLHD HTWTFRHIYR GQPKRHLLTT GWSLFVGSKR LRAGDSVLFI 240 RDEKSQLMVG VRRANRQQTA LPSSVLSADS MHIGVLAAAA HATANRTPFT IFYNPRACPS 300 EFVIPLSKYR KAICGSQLSV GMRFGMMFET DESGKRRYMG TIIGISDLDP LRWPGSKWRN 360 LQVEWDESGC NDKPTRVSAW DIETPESLFF FPSLTSGLKR QFHPSFLAGE TEWGSLIKRP 420 LIRVSDAANG FLHMPGFGSD QLMNPNAAFM SSMHQQNAVI GHGAMQPVMN QKPEIVQSEN 480 KLPVNTSASQ QSLTRNMSAS GKHGKQMPST LGKGKQEPGQ SMEQASQVTS VIGCDEDKAN 540 RLSQRPDLHP LQADPCSEIS QQIYTPQSEP ISFNGLSPLL EADELTSQMS PFQSLGVTYR 600 PPLQDSSQAI LPDSTNPSLF HDIWDHNQLN SFKFDQFSPL MQQDLFACRN IGMSNSANSN 660 ILDPSLSDAV LDDFCAIKEA DFQNPSGCLV GNTNSVQDVQ SQITSASFAD SQAFSRQDFP 720 DTSGGTGTSS SNVDFDESSL LQNSKSSWPK VAAPRVRTYT KVQKAGSVGR SIDVTSFRNY 780 EELKSAIECM FGLEGLLTDP KGSGWKLVYV DYESDVLLVG DDPWEEFVGC VRCIRILSPT 840 EVQQMSEEGM KLLNSAGMQG VKASFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 387 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010539862.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010539862.1 | 0.0 | PREDICTED: auxin response factor 5-like | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A087H7S5 | 0.0 | A0A087H7S5_ARAAL; Auxin response factor | ||||
STRING | XP_010539862.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |