PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539771.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 371aa MW: 42203.6 Da PI: 5.9111

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.3	8.9e-51	21	155	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv++yL+ k+ + l + +i+evd++++ePw+Lp+ ++ +ekewyf+s rd+ky+tg r+nrat++gyWk tgkdke+++ XP_010539771.1 21 LPPGFRFHPTDEELVTFYLASKLFNGGgLFGFIHIPEVDLNHCEPWELPEVARMGEKEWYFYSLRDRKYPTGLRTNRATAAGYWKVTGKDKEIFA 115 79******************887775555688***********8888899*********************************** PP NAM 95 kkgel.....vglkktLvfykgrapkgektdWvmheyrle 129 +g + +g+kktLvfykgrap+g kt+Wvmheyrle XP_010539771.1 116 GGGGApapelMGMKKTLVFYKGRAPRGIKTKWVMHEYRLE 155 8333345555**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-55	18	164	IPR003441	NAC domain
PROSITE profile	PS51005	53.355	21	212	IPR003441	NAC domain
Pfam	PF02365	3.6E-26	22	154	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-55	200	212	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MLGVEDVMSE LAGEEGKERG LPPGFRFHPT DEELVTFYLA SKLFNGGGLF GFIHIPEVDL 60 NHCEPWELPE VARMGEKEWY FYSLRDRKYP TGLRTNRATA AGYWKVTGKD KEIFAGGGGA 120 PAPELMGMKK TLVFYKGRAP RGIKTKWVMH EYRLESLRHA CKLLHESDWE AIDLIETLRY 180 MVVNTLPFSV YERNCSVVFI TEEWVICRVF NKTGDRRNVR SHAQINNLDS SSSSNHHDGH 240 HRRHHLTLPP LLEAPQPPAQ LPSLLDHHGH EADELKTLIN PEASQLDTII FSSEQDDICS 300 VSKQLMKTES SDNRSILRHQ NPDFEDYYFK NAVLFQESDF NLLGLSPSSS APADLHVIFD 360 SPAAESWPLD L

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MLGVEDVMSE LAGEEGKERG LPPGFRFHPT DEELVTFYLA SKLFNGGGLF GFIHIPEVDL  60
NHCEPWELPE VARMGEKEWY FYSLRDRKYP TGLRTNRATA AGYWKVTGKD KEIFAGGGGA  120
PAPELMGMKK TLVFYKGRAP RGIKTKWVMH EYRLESLRHA CKLLHESDWE AIDLIETLRY  180
MVVNTLPFSV YERNCSVVFI TEEWVICRVF NKTGDRRNVR SHAQINNLDS SSSSNHHDGH  240
HRRHHLTLPP LLEAPQPPAQ LPSLLDHHGH EADELKTLIN PEASQLDTII FSSEQDDICS  300
VSKQLMKTES SDNRSILRHQ NPDFEDYYFK NAVLFQESDF NLLGLSPSSS APADLHVIFD  360
SPAAESWPLD L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-44	18	154	12	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539771.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539773.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9S851	1e-112	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	B8XRZ5	1e-118	B8XRZ5_CARHR; CUP-SHAPED COTYLEDON3
STRING	XP_010539771.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-107	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]