PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539753.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SBP

Protein Properties

Length: 1040aa MW: 115598 Da PI: 8.8059

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539753.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.1	1.7e-40	142	219	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+ C++dls+ak+yhrrhkvCe hska++vlv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_010539753.1 142 MCQVDCCKEDLSSAKDYHRRHKVCELHSKASKVLVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 219 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.1E-33	137	204	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.077	140	217	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-37	141	222	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-28	143	216	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	5.47E-5	800	938	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.5E-4	841	936	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1040 aa Download sequence Send to blast
MDEAGAQVAA PIFIHQSLSP AVRKRDLYYQ MPSLHPQTQT QTLQRRDDWN PKMWDWDCRR 60 FEARPVDAEI LRHGKDSEFN VSGKNDSNSG LTLRNSSGGS EGAERNLDLN LGNGLNDMEE 120 TQASRQSKRV RSSSPGGANY PMCQVDCCKE DLSSAKDYHR RHKVCELHSK ASKVLVGKQM 180 QRFCQQCSRF HLLSEFDEGK RSCRRRLAGH NRRRRKTQPE EITSRFVVPG NCDSTSNPNT 240 DLVAFLTALA RAQGRNEGKP IASPPGVPDR EQLLQMLNKI NSLPFSAGLT SKLNNIGLLV 300 GKTPENPSGN SQNGMNETSH SQSTLDLLAV LSSTVASSSP AALALLSQSQ RRIEINNSDK 360 TKSTSSGHGT TANLERKTRD LPSVGGERSS SSHQSPSQDS DSHIQDTRSS LSLQLFTSSP 420 EDESRPNVAT SRKYYSSASS NPVEDRSPST SPIMQELFPM QKSPGTVRSK NDKNTGFKTG 480 CLPLELFGAA DRRAESNIFK GFGHQSGYAS SGSDNSPPSL NSDAQDRTGR IVFKLLGKDP 540 SNLPETLRIQ IYNWLSNIPS EMESYIRPGC VILSVYVSMS AAAWEQLEEN LLQRVSFLVR 600 DSRSEFWRKT RFLVYTGRKV ASYKDGKVWL RKSRRTWSSP ELISVSPVAV VAGKETTLLV 660 KGRNLTNDGI RIHCGHMGSY ASVQVTSSAC KKPGFDQLNV DAFRIPGESD SFWGRCFIEV 720 ENGFKGDSFP LIIADATICK ELNHLEDEFH PERRVHGDIT GSREEVLCFL NELGWLFQRN 780 MTSDINGDPD FALTRFRFLL VFSVERDYCA LVRTLLDMVV ERNSGKDGLN KESLDMLAEI 840 QLLNRAVKRR SKKMAEMLIH YSPNPAPDAS KKFIFFPDMA RAGASTPLHL AACTPGLDDI 900 VDVLTNDPQE IGLCGWNSLR DARGHTPYSY AATRNNHGYN ALVARKIADK RNGRVSINVE 960 SDWIDQTVGM NKRSCTTCAT VALKYERKVL GSRRMFPTPI IHSMLAIATV CVCVCVFMHA 1020 FPIVREGSHF SWGGLDFGSM

Sequence ? help Back to Top

Protein Sequence Length: 1040 aa Download sequence Send to blast

MDEAGAQVAA PIFIHQSLSP AVRKRDLYYQ MPSLHPQTQT QTLQRRDDWN PKMWDWDCRR  60
FEARPVDAEI LRHGKDSEFN VSGKNDSNSG LTLRNSSGGS EGAERNLDLN LGNGLNDMEE  120
TQASRQSKRV RSSSPGGANY PMCQVDCCKE DLSSAKDYHR RHKVCELHSK ASKVLVGKQM  180
QRFCQQCSRF HLLSEFDEGK RSCRRRLAGH NRRRRKTQPE EITSRFVVPG NCDSTSNPNT  240
DLVAFLTALA RAQGRNEGKP IASPPGVPDR EQLLQMLNKI NSLPFSAGLT SKLNNIGLLV  300
GKTPENPSGN SQNGMNETSH SQSTLDLLAV LSSTVASSSP AALALLSQSQ RRIEINNSDK  360
TKSTSSGHGT TANLERKTRD LPSVGGERSS SSHQSPSQDS DSHIQDTRSS LSLQLFTSSP  420
EDESRPNVAT SRKYYSSASS NPVEDRSPST SPIMQELFPM QKSPGTVRSK NDKNTGFKTG  480
CLPLELFGAA DRRAESNIFK GFGHQSGYAS SGSDNSPPSL NSDAQDRTGR IVFKLLGKDP  540
SNLPETLRIQ IYNWLSNIPS EMESYIRPGC VILSVYVSMS AAAWEQLEEN LLQRVSFLVR  600
DSRSEFWRKT RFLVYTGRKV ASYKDGKVWL RKSRRTWSSP ELISVSPVAV VAGKETTLLV  660
KGRNLTNDGI RIHCGHMGSY ASVQVTSSAC KKPGFDQLNV DAFRIPGESD SFWGRCFIEV  720
ENGFKGDSFP LIIADATICK ELNHLEDEFH PERRVHGDIT GSREEVLCFL NELGWLFQRN  780
MTSDINGDPD FALTRFRFLL VFSVERDYCA LVRTLLDMVV ERNSGKDGLN KESLDMLAEI  840
QLLNRAVKRR SKKMAEMLIH YSPNPAPDAS KKFIFFPDMA RAGASTPLHL AACTPGLDDI  900
VDVLTNDPQE IGLCGWNSLR DARGHTPYSY AATRNNHGYN ALVARKIADK RNGRVSINVE  960
SDWIDQTVGM NKRSCTTCAT VALKYERKVL GSRRMFPTPI IHSMLAIATV CVCVCVFMHA  1020
FPIVREGSHF SWGGLDFGSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-30	134	216	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	844	849	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539753.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539755.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A1J3JYZ9	0.0	A0A1J3JYZ9_NOCCA; Squamosa promoter-binding-like protein 14
STRING	XP_010539753.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3999	25	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]