PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539733.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 598aa    MW: 67453.5 Da    PI: 5.7821
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539733.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.32.4e-2952136187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r++m++++r+++ k+plW+evs+km+e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++fdqlea
  XP_010539733.1  52 RWPRQETLALLKIRSDMDTAFRDASVKGPLWDEVSRKMSELGYSRSSKKCKEKFENVFKYHKRTKEGRTGKSEGK--TYRFFDQLEA 136
                     8********************************************************************975544..6*******85 PP
2trihelix1071.3e-33402487187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k e+ aLi++r++++++++++  k+plWee+s+ mr+ gf+rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  XP_010539733.1 402 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRRLGFNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 487
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001149111IPR001005SANT/Myb domain
CDDcd122033.98E-2451116No hitNo description
PfamPF138373.7E-1951137No hitNo description
PROSITE profilePS500907.00451109IPR017877Myb-like domain
SMARTSM007172.9E-4399461IPR001005SANT/Myb domain
PROSITE profilePS500907.282401459IPR017877Myb-like domain
CDDcd122032.20E-28401466No hitNo description
PfamPF138371.1E-22401488No hitNo description
Gene3DG3DSA:1.10.10.607.4E-4401458IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MMQLGGTTTT AAATPQTSDA AAPETAPAAD AEAVGPLEAS EEMSDRGFGG NRWPRQETLA  60
LLKIRSDMDT AFRDASVKGP LWDEVSRKMS ELGYSRSSKK CKEKFENVFK YHKRTKEGRT  120
GKSEGKTYRF FDQLEALENQ SSSMVHHHQP QTQTQMPPRH HQHNNNNNSI VFSATLTQPA  180
AANAENPPPG VALTTVTSAM PLPNTAVAFT QPPVPTSLNP TFHGGSGDFL SDSTYSSSST  240
STSSDVEIGG GTRKKRKRKW KDFFERLMKQ VVEKQEELQR RFLEAVEKRE RERMVREEAW  300
RMQEMARINR EREILAQERS MAAAKDAAVM KFLQKLSENT NVSQSIQLPP QPQPQQPPPQ  360
TQTQTPQPQP QPQTQLAVTA RAIDMTKTDN GDQNFTPASS SRWPKVEIEA LIKLRTNLDS  420
KYQENGPKGP LWEEISAGMR RLGFNRSSKR CKEKWENINK YFKKVKESNK KRPEDSKTCP  480
YFHQLDALYR ERNKFNFADY NVASTSSTST STGQMKAENA VPLMVQPEQQ WPPAPQTQTH  540
TEDVEQGENS RRNRDEDEED RGGEFEGEEE EDDEDDDDDG DGGEFEIVPN NNNKGNVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252257RKKRKR
2252258RKKRKRK
3253258KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539733.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5735268e-39KF573526.1 Lilium hybrid cultivar Sorbonne LS-ZJU02 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539733.10.0PREDICTED: trihelix transcription factor GT-2
SwissprotQ391171e-147TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A398AB830.0A0A398AB83_BRACM; Uncharacterized protein
TrEMBLD7KTX90.0D7KTX9_ARALL; Uncharacterized protein
STRINGXP_010539733.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-180Trihelix family protein