PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539617.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 586aa    MW: 64313 Da    PI: 6.3099
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.47.8e-25121222199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+ltpsd+++ g +++p+ +a++         +++ +  tl+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++s
  XP_010539617.1 121 FAKILTPSDANNGGGFSVPRFCADSVfpsldyqAEPPVQ--TLSITDIHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFM--KNS 211
                     89*****************9999999****985444444..9************************************************..779 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++++v+v+r+
  XP_010539617.1 212 RGKMFVGVRRT 222
                     ********996 PP

2Auxin_resp88.71.1e-29273355183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+++a+++ +F+vvY+P a++s+Fvvk+e+ve+++ v +++GmR+kma+etedss++++ +G+++++ + ++  W++S+W++L+
  XP_010539617.1 273 AMDRAAKGLPFDVVYYPTAGWSDFVVKAEDVEASMAVYWAPGMRVKMAMETEDSSRITWfQGIISSTFQ-ETGPWRGSPWKQLQ 355
                     5678999****************************************************9999999988.8889********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-29112227IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-33119222IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-22121222IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449121223IPR003340B3 DNA binding domain
SMARTSM010199.8E-18121223IPR003340B3 DNA binding domain
CDDcd100171.36E-20121221No hitNo description
PfamPF065071.0E-24273355IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MPPFSATAGA ADVHREVEPK IWRASAGASV WIPSLRARVY YFPQGHVEHC CSSALSSSLH  60
PSMPPVPCVI SSVQLLADPV TDEVFAHLVL QPVPPTQFAS LDATRCDGFN GDTEEDRIVT  120
FAKILTPSDA NNGGGFSVPR FCADSVFPSL DYQAEPPVQT LSITDIHGVV WNFRHIYRGT  180
PRRHLLTTGW SKFVNHKKLI AGDSVVFMKN SRGKMFVGVR RTIVSGNGGY GGDNFSSCYY  240
QISGVAKEDN EGEKKGFRRV GKGKLTPEAV AEAMDRAAKG LPFDVVYYPT AGWSDFVVKA  300
EDVEASMAVY WAPGMRVKMA METEDSSRIT WFQGIISSTF QETGPWRGSP WKQLQVTWDE  360
AEILQNAKRV NPWQVELIVA PNQLHATFPP RKRFKYPHTT GIFSDEDGEV LYSQRGLSDA  420
TPPGDISPSL LKYSTIPAGM QGARHYHFGS YNSTGFMGED IPQIYTNNFL NLLSGSKRES  480
TELNNGSPLS DDMSPHSQSS IQSSGTDPVG NQGPNSARVR VNSFQLFGKI INLPEPTESG  540
ADESGYFEED GSKGSSEIEF LNNTLDSSLT GRGHHPPENV KRLSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-601737651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539617.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539617.10.0PREDICTED: auxin response factor 17 isoform X2
RefseqXP_019058117.10.0PREDICTED: auxin response factor 17 isoform X1
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLV4KJ900.0V4KJ90_EUTSA; Auxin response factor
STRINGXP_010539617.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]