PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539452.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 367aa    MW: 39262.7 Da    PI: 6.4937
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.52.8e-081957339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                    +r C+ +++  +  fC+ +  +lC +C + +H +  H++
  XP_010539452.1 19 ARSCDGCKSVAAAVFCRVDAAFLCVTCDTRIHTStrHER 57
                    578******99*********************7777876 PP
2zf-B_box27.37.6e-0958103342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ ++   C+ +   lC  C + +H+       H++vp+
  XP_010539452.1  58 VWVCEVCEQAPAAVTCKADAAALCVACDSDIHSAnplasrHDRVPV 103
                     689*****************************66899999999986 PP
3CCT69.77.4e-24297340144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  XP_010539452.1 297 REARVSRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 340
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-71760IPR000315B-box-type zinc finger
PROSITE profilePS501199.7411760IPR000315B-box-type zinc finger
CDDcd000212.47E-82060No hitNo description
PfamPF006431.2E-52057IPR000315B-box-type zinc finger
PROSITE profilePS5011910.56656103IPR000315B-box-type zinc finger
PfamPF006438.7E-757103IPR000315B-box-type zinc finger
CDDcd000217.64E-959103No hitNo description
SMARTSM003361.1E-861103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.747297339IPR010402CCT domain
PfamPF062035.5E-18297339IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGIGFGDVKG LSVGWGAAAR SCDGCKSVAA AVFCRVDAAF LCVTCDTRIH TSTRHERVWV  60
CEVCEQAPAA VTCKADAAAL CVACDSDIHS ANPLASRHDR VPVEPFFDSA VAKFSSSSFG  120
LLGNFTSPSV DFCAAADDLG ASPWLIPGDF NENIKTNIGS TAEMKSSDFV LSDFERLMEF  180
ENSNSFQPPH NSAGADSVVP VQTKPNPVTA ANNEHCFDID FCRSKLSTFC YPSQSISHSV  240
STSSIDFGVV PDGGTSLSEI SIPYGRNMNA GSTGTVGDPS SSVSGGVTNQ QTCGSDREAR  300
VSRYREKRKN RKFEKTIRYA SRKAYAESRP RIKGRFAKRT DGDNDNDVLL VGHVYASASQ  360
YGVVPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539452.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8977898e-38AB897789.1 Lemna aequinoctialis LaCOH1 mRNA for CONSTANS-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539452.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-160COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLV4KXA91e-178V4KXA9_EUTSA; Uncharacterized protein
STRINGXP_010539452.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-153CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]