PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539408.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 246aa    MW: 28079.6 Da    PI: 4.8942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-145699755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      Er+RR+++N++++ Lr+++P+      +K++Ka+i + A++YI++Lq
  XP_010539408.1 56 LSERNRRRKLNQRLFALRSVVPNI-----TKMDKASIIRDAIDYIQELQ 99
                    57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-1743112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.8764998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.24E-1452102No hitNo description
SMARTSM003531.3E-1555104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1655114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-125699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MENIDEECNN YWESTTFFQN EELEYNSWPL DEAVYGSYDS SSPEGAASSP ASKNILSERN  60
RRRKLNQRLF ALRSVVPNIT KMDKASIIRD AIDYIQELQK EENRLEIEVR ELESVRSKRS  120
LTFDKDFDGE LLVPVTAEMN KQVDHGSTRS RSSSPIEVLE SKVAFMGEST VVVSITCNKR  180
ADTMVRLSEV FETLKLKILA VNIVSFSGIL FHTAFVEADE REKGRLRVKI DSAIAAFNDS  240
QRHILQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539408.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539408.10.0PREDICTED: transcription factor bHLH35-like
RefseqXP_010539409.10.0PREDICTED: transcription factor bHLH35-like
RefseqXP_010539410.10.0PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV91e-114BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A087GBL81e-115A0A087GBL8_ARAAL; Uncharacterized protein
STRINGXP_010539408.11e-180(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-108bHLH family protein