PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539304.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 449aa    MW: 49283.9 Da    PI: 6.6739
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539304.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.6e-152471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ede l+ +v++ G g+W+++ +  g+ R++k+c++rw ++l
   XP_010539304.1 24 KGPWTAAEDETLAAYVREQGEGNWNAVQKNTGLARCGKSCRLRWANHL 71
                     79******************************************9986 PP
2Myb_DNA-binding513.3e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ l++++++qlG++ W++ a+ ++ gRt++++k++w++
   XP_010539304.1  77 KGAFSAEEERLIIQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 120
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0491971IPR017930Myb domain
SuperFamilySSF466892.24E-2823118IPR009057Homeodomain-like
SMARTSM007171.2E-112373IPR001005SANT/Myb domain
PfamPF002498.8E-142471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-222578IPR009057Homeodomain-like
CDDcd001671.51E-92671No hitNo description
PROSITE profilePS5129425.6972126IPR017930Myb domain
SMARTSM007173.3E-1676124IPR001005SANT/Myb domain
PfamPF002497.0E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2579124IPR009057Homeodomain-like
CDDcd001679.79E-1279122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MMLYGGGTSK DGGGGGGSAV VLKKGPWTAA EDETLAAYVR EQGEGNWNAV QKNTGLARCG  60
KSCRLRWANH LRPNLKKGAF SAEEERLIIQ LHAQLGNKWA RMAAQLPGRT DNEIKNYWNT  120
RLKRLQRQGL PLYPPEILPN HHQMYLRPLS QPSSPLHSPS SSSSFTFPTT STYCNPFSTP  180
PPSLSSPLSS PTLPLFVPPR SPTLHHDNTI VSFSFPGPPL LHPPSFHAKK SSYPTFLTLP  240
YTSSSPPPPS ASPLHSFSLS PSSSPTQMLH THFTPSLFQF NEPVYSLKPE LPSNQMSHSA  300
VFDVTSLSDN EKHHQNLDTG LHRRSSCELL ESVLDEAEAL ACGGRAPKRR QVDDDNNVLD  360
SFGQVLKQRE GESQQMNAAM QEDIAKFLDW GSDSGEISNG HSSVVTDDNL VLDLHHFISF  420
FPADASAAEN DDHDNNTNSC SWDNLPGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-30211241103C-Myb DNA-Binding Domain
1msf_C2e-30211241103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344349RAPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539304.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539304.10.0PREDICTED: transcription factor MYB29-like
SwissprotQ9S7731e-135MYB97_ARATH; Transcription factor MYB97
TrEMBLA0A078JI721e-134A0A078JI72_BRANA; BnaAnng23930D protein
STRINGXP_010539304.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99391934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.13e-77myb domain protein 120
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]