PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539165.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 312aa MW: 34306.7 Da PI: 5.1457

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+ +v+++G+g Wk I r ++R+ ++k++w+++ XP_010539165.1 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPDfssqlTHRSNIDLKDKWRNL 56 79************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.578	1	62	IPR017930	Myb domain
SuperFamily	SSF46689	1.51E-16	2	64	IPR009057	Homeodomain-like
SMART	SM00717	7.8E-9	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-15	5	56	IPR009057	Homeodomain-like
CDD	cd11660	3.95E-21	6	56	No hit	No description
Pfam	PF13921	2.7E-9	8	69	No hit	No description
SMART	SM00526	2.7E-16	147	212	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	6.35E-15	148	228	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.4E-11	148	218	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	21.016	149	217	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	3.9E-9	151	210	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILRDPDFSSQ LTHRSNIDLK DKWRNLSVAP 60 GKVAFLPEGE SFFSVETIGE LRPPWILGVN SMDINNMEDW LLTITAAAAA ASTATTNINP 120 SPAASLPRSA SSDLSMDDNS LNIAVDAKNA PRYDGMIFEA LSALSDANGS DITAILSFIE 180 KRHELPLNFR RILGSRLRRL AAQGKLEKVQ NFYKISDPSG TRTPAPRQKD TNLKPRQSNS 240 QSNTTVTQEM VEEAAITAAY KVVEAENKVD VARGAMEELE RMTRIAEDTE VFLEIAKEIH 300 ERCSGGEVVL LA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539165.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539165.1	0.0	PREDICTED: telomere repeat-binding factor 4-like
Swissprot	F4IEY4	1e-106	TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBL	V4K9Z4	1e-117	V4K9Z4_EUTSA; Uncharacterized protein
STRING	XP_010539165.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2321	28	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	6e-73	MYB_related family protein

Publications ? help Back to Top
Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]