PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010539148.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 368aa MW: 41514.5 Da PI: 4.83 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.2e-20 | 153 | 202 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp + r+r++lg+f+taeeAa +++a+ +l+g XP_010539148.1 153 KFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFDTAEEAAVVYDNAAIRLRG 202 89*******.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03552 | 1.0E-11 | 86 | 126 | IPR005150 | Cellulose synthase |
Gene3D | G3DSA:3.30.730.10 | 4.3E-30 | 152 | 209 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.512 | 153 | 210 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-38 | 153 | 216 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-12 | 153 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.23E-34 | 153 | 209 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-21 | 153 | 210 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.1E-10 | 154 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 176 | 192 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0030244 | Biological Process | cellulose biosynthetic process | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MVILDEYMGV KYTEHKSVFT KYAGKSPEEK LSGGGGIFRP ASRMVRISMT DPDATDSSSD 60 EDELPIPRRR VKRFVSEIRV EPSCFIEPRA PEWYFNQKMD YLKNKVHPAF VRERRAMKTY 120 FNSASVPTKE RKRIAAESPS LKVSSGHAAD GRKFRGVRQR PWGKWAAEIR DPEQRRRIWL 180 GTFDTAEEAA VVYDNAAIRL RGPDALTNFL VPPAEPVVSG QEKPETNTSS SCCESSDEFH 240 HRLSSPTSVL NFRTHLAEED ESITKPAKKV KTELPGNPWF QTGNSISGDS DDSLPLDTPF 300 LDSFFNEPPE ISIFDQPMSD ILPENDFFAD IVFDEGMSIG GSDPLPDFNS DYKDFEDLLI 360 FPEPLSAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-21 | 149 | 209 | 1 | 62 | ATERF1 |
3gcc_A | 6e-21 | 149 | 209 | 1 | 62 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010539148.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010539148.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
Swissprot | Q9SUE3 | 1e-100 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | V4NBA3 | 1e-100 | V4NBA3_EUTSA; Uncharacterized protein | ||||
STRING | XP_010539148.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2229 | 25 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-97 | cytokinin response factor 4 |
Publications ? help Back to Top | |||
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