PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010539066.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 25408 Da PI: 9.6864 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.3 | 2.1e-16 | 127 | 215 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k++++s+v+ +l lp +f+++ k+ + +tl de+g+ +e + rk++ l++GW++F+ a++L +gD +vF+l++ ++f +v XP_010539066.1 127 FVKAMLQSHVSGCFWLGLPVHFCRSDLPKH--DCAMTLIDEEGEDYETVYLARKTG----LSGGWRGFAIAHNLVDGDALVFQLIHPTTF--KVY 213 89*********************8874333..347***************656665....*************************97777..666 PP EE CS B3 96 vf 97 + XP_010539066.1 214 IT 215 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.08E-23 | 120 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-19 | 122 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-24 | 125 | 216 | No hit | No description |
Pfam | PF02362 | 6.0E-14 | 127 | 216 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-23 | 127 | 218 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.111 | 127 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MVVAKPSSYE EFRLKRLEEN KKRMDALNLP QLSLALRSTS PKSSPMKKSK PRTRQKQQVA 60 VRRSSRLSNV SSPVYKEVDV ERVQIPRRIF KGKDFSDQFY VSHEDRADAL AKAEKLQDEL 120 GDEYPSFVKA MLQSHVSGCF WLGLPVHFCR SDLPKHDCAM TLIDEEGEDY ETVYLARKTG 180 LSGGWRGFAI AHNLVDGDAL VFQLIHPTTF KVYITRVNGR GES |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010539066.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010539066.1 | 1e-167 | PREDICTED: B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 1e-89 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A1R3I8Q8 | 1e-100 | A0A1R3I8Q8_COCAP; Uncharacterized protein | ||||
STRING | XP_010539066.1 | 1e-166 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 3e-82 | B3 family protein |
Publications ? help Back to Top | |||
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