PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538943.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 386aa    MW: 43320.2 Da    PI: 6.2431
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.85.7e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+ ++++G g+W++ ++  g++R++k+c++rw +yl
   XP_010538943.1 14 KGPWTPEEDQKLVEHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.41.4e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
   XP_010538943.1  67 RGKFSPEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.751961IPR017930Myb domain
SuperFamilySSF466892.29E-3211108IPR009057Homeodomain-like
SMARTSM007175.6E-161363IPR001005SANT/Myb domain
PfamPF002499.3E-181461IPR001005SANT/Myb domain
CDDcd001677.36E-131661No hitNo description
PROSITE profilePS5129427.47462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2865117IPR009057Homeodomain-like
SMARTSM007176.4E-1766114IPR001005SANT/Myb domain
PfamPF002491.3E-1667112IPR001005SANT/Myb domain
CDDcd001671.14E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLVEHIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SPEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
IDPTTHQPRT DIFSSLPQLI ALANLKDLME QTSQYSSIQA EATQLAKFQY LQCLLQASAS  180
LNGNISGNSP TNILDIDHHH AMNLLNSMVS WDKDQNPCLN PTQIEVIDQN QDLFSFGTTT  240
NPTTQPLQQQ YSMDNTPPPN ELSQGDPLLL HVPFSLQTSL NSDDDHLINQ MPVPFDAVVK  300
HPSHDDDHHR HHDDPSSWVL PSLINHNPND TITTSLPHHR NMISDSSLSN NNPAAGEASS  360
SSSYGGGGSP YWPDFYFDEN LIHDIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538943.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538943.10.0PREDICTED: transcription factor MYB86-like
SwissprotQ9S9Z20.0MYB93_ARATH; Transcription factor MYB93
TrEMBLD7KK810.0D7KK81_ARALL; AtMYB93
STRINGXP_010538943.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-167myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]