PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010538860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 43111.1 Da PI: 6.2423 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.2 | 4.1e-50 | 17 | 143 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppGfrFhPt+eel+ +yL+kk++ +k++l +vi+evd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat +g+Wkatg+dk ++ XP_010538860.1 17 PPGFRFHPTEEELLRYYLRKKISYEKIDL-DVIREVDLNKLEPWDIQErcRIGStPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIIY 110 9****************************.9***************963433332456************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyr 127 s + + +gl+ktLvfykgrap+g+k+dW+mheyr XP_010538860.1 111 S-GLQRIGLRKTLVFYKGRAPHGQKSDWIMHEYR 143 *.999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-55 | 12 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.597 | 16 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-26 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MEDNEVNLSI NGQSQIPPGF RFHPTEEELL RYYLRKKISY EKIDLDVIRE VDLNKLEPWD 60 IQERCRIGST PQNDWYFFSH KDKKYPTGTR TNRATVAGFW KATGRDKIIY SGLQRIGLRK 120 TLVFYKGRAP HGQKSDWIMH EYRPDDNSVA RTTNNGFDVV TGDSMNCSED GWVVCRVFKK 180 KNYQKITDSP KISSSPLNPE KPMFRNQNGN VLDQILLCMD RTGSNICGIE NQITNDNLGL 240 FGSCHENAED VLLHESFMQL PRLEAPKSEN HPVDENRLGK SPVQGERTGP VSDWASLDRL 300 VAWQLNNGHH RTVDMFYRNK SFSDDHPNFE EYGNKIQRLD LQWHNNDEDI DIWSSLTESS 360 SSLTSLDPLG HLSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-46 | 13 | 182 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-46 | 13 | 182 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-46 | 13 | 182 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-46 | 13 | 182 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-46 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 9e-46 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 9e-46 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 9e-46 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 9e-46 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 9e-46 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 9e-46 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 9e-46 | 13 | 182 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 8e-46 | 13 | 182 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 8e-46 | 13 | 182 | 14 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00016 | PBM | Transfer from AT1G32770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010538860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010538860.1 | 0.0 | PREDICTED: NAC domain-containing protein 12-like | ||||
Swissprot | Q9LPI7 | 1e-153 | NAC12_ARATH; NAC domain-containing protein 12 | ||||
TrEMBL | R0IGT7 | 1e-155 | R0IGT7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010538860.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32770.1 | 1e-154 | NAC domain containing protein 12 |