PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538846.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Nin-like

Protein Properties

Length: 894aa MW: 98538.3 Da PI: 6.3728

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538846.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.5e-29	584	634	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI RWP+Rkik++ XP_010538846.1 584 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGILRWPSRKIKKV 634 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	3.58E-5	207	278	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.905	571	654	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-25	586	634	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.94E-9	814	859	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-7	820	861	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence Send to blast
MSEPDEDSTR NGVIPPPTRP RELLMDLDDL NLDSSWPLDQ IPYISLSNQF MSPFVVSSSS 60 EQPCSPLWAF SDGGGATAAP ADENLSPASG VPPFRLAEYP LFLPCSAPSV AENTAENGNN 120 LQFPSPLMGL VPPENADYYC VIKERITQAL RYFKESTEQQ VLAQVWAPVR KNGRELLTTL 180 GQPFVLNPNG NGLNQYRMIS LTYMFSVDSE SDIELGLPGR VYRQKLPEWS PNVQYYSSRE 240 FSRLDHALHY NVRGTLALPI FNPSGQSCIG VVELIMTSEK IHYAPEVDRV CKALEAVNLK 300 SSEILDHQNT QICNEGRQNA LAEILEILTV VCETYKLPLA QTWVPCQHRS VLANGGGLKK 360 SCTSFDGSCM GQVCMSTTDV ACYVIDAHVW GFRDACLEHH LQKGQGVAGR AFMNRYSCFC 420 RDVTKFCKTQ YPLVHYALMF KLTSCFAICL QSSHTGEDDY ILEFFLPPEI ADRSEQDSML 480 GSLLTTMKQH FQSLRVASGV DFGEETDEVS VEIIEVLPDK KIISKIKSIR VPSSGFTSNA 540 GETGLNPHPS VVPSSDPVNE KNVAGDNGVV KEAKKQKRKR GKTEKTISLD VLQQYFTGSL 600 KDAAKSLGVC PTTMKRICRQ HGILRWPSRK IKKVNRSITK LKRVIESVQD TDKALDLTSM 660 AIGSIPQTKI QATAKLLNSP SGPKEPEPPK NNDSPNYGSS GRIPQEPHGT SELPSNRCKR 720 SQNRDDSVET PTSQGSCGGN PQDETTAVNR EPVLAVDVSA SSFSMPNRLD PIQGMPIEDA 780 GSSKDLRNLC SSQRLPESNR LNTGNNSHNP TKEEGSGSET RSVTIKACYK EDIIRFRISS 840 SSSVTELKEE IAKRLRLDTE EQDCFLRGSY STAWAHGVSP SCGKAQQPMD GSHL

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence Send to blast

MSEPDEDSTR NGVIPPPTRP RELLMDLDDL NLDSSWPLDQ IPYISLSNQF MSPFVVSSSS  60
EQPCSPLWAF SDGGGATAAP ADENLSPASG VPPFRLAEYP LFLPCSAPSV AENTAENGNN  120
LQFPSPLMGL VPPENADYYC VIKERITQAL RYFKESTEQQ VLAQVWAPVR KNGRELLTTL  180
GQPFVLNPNG NGLNQYRMIS LTYMFSVDSE SDIELGLPGR VYRQKLPEWS PNVQYYSSRE  240
FSRLDHALHY NVRGTLALPI FNPSGQSCIG VVELIMTSEK IHYAPEVDRV CKALEAVNLK  300
SSEILDHQNT QICNEGRQNA LAEILEILTV VCETYKLPLA QTWVPCQHRS VLANGGGLKK  360
SCTSFDGSCM GQVCMSTTDV ACYVIDAHVW GFRDACLEHH LQKGQGVAGR AFMNRYSCFC  420
RDVTKFCKTQ YPLVHYALMF KLTSCFAICL QSSHTGEDDY ILEFFLPPEI ADRSEQDSML  480
GSLLTTMKQH FQSLRVASGV DFGEETDEVS VEIIEVLPDK KIISKIKSIR VPSSGFTSNA  540
GETGLNPHPS VVPSSDPVNE KNVAGDNGVV KEAKKQKRKR GKTEKTISLD VLQQYFTGSL  600
KDAAKSLGVC PTTMKRICRQ HGILRWPSRK IKKVNRSITK LKRVIESVQD TDKALDLTSM  660
AIGSIPQTKI QATAKLLNSP SGPKEPEPPK NNDSPNYGSS GRIPQEPHGT SELPSNRCKR  720
SQNRDDSVET PTSQGSCGGN PQDETTAVNR EPVLAVDVSA SSFSMPNRLD PIQGMPIEDA  780
GSSKDLRNLC SSQRLPESNR LNTGNNSHNP TKEEGSGSET RSVTIKACYK EDIIRFRISS  840
SSSVTELKEE IAKRLRLDTE EQDCFLRGSY STAWAHGVSP SCGKAQQPMD GSHL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538846.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538846.1	0.0	PREDICTED: protein NLP7-like isoform X3
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	V4MHY8	0.0	V4MHY8_EUTSA; Uncharacterized protein
STRING	XP_010538844.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]