PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010538845.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 895aa MW: 98609.4 Da PI: 6.3728 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.7 | 5.5e-29 | 584 | 634 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI RWP+Rkik++ XP_010538845.1 584 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGILRWPSRKIKKV 634 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55781 | 3.63E-5 | 207 | 278 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 17.905 | 571 | 654 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.5E-25 | 586 | 634 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:3.10.20.240 | 3.1E-7 | 813 | 859 | No hit | No description |
SuperFamily | SSF54277 | 2.99E-9 | 814 | 859 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 895 aa Download sequence Send to blast |
MSEPDEDSTR NGVIPPPTRP RELLMDLDDL NLDSSWPLDQ IPYISLSNQF MSPFVVSSSS 60 EQPCSPLWAF SDGGGATAAP ADENLSPASG VPPFRLAEYP LFLPCSAPSV AENTAENGNN 120 LQFPSPLMGL VPPENADYYC VIKERITQAL RYFKESTEQQ VLAQVWAPVR KNGRELLTTL 180 GQPFVLNPNG NGLNQYRMIS LTYMFSVDSE SDIELGLPGR VYRQKLPEWS PNVQYYSSRE 240 FSRLDHALHY NVRGTLALPI FNPSGQSCIG VVELIMTSEK IHYAPEVDRV CKALEAVNLK 300 SSEILDHQNT QICNEGRQNA LAEILEILTV VCETYKLPLA QTWVPCQHRS VLANGGGLKK 360 SCTSFDGSCM GQVCMSTTDV ACYVIDAHVW GFRDACLEHH LQKGQGVAGR AFMNRYSCFC 420 RDVTKFCKTQ YPLVHYALMF KLTSCFAICL QSSHTGEDDY ILEFFLPPEI ADRSEQDSML 480 GSLLTTMKQH FQSLRVASGV DFGEETDEVS VEIIEVLPDK KIISKIKSIR VPSSGFTSNA 540 GETGLNPHPS VVPSSDPVNE KNVAGDNGVV KEAKKQKRKR GKTEKTISLD VLQQYFTGSL 600 KDAAKSLGVC PTTMKRICRQ HGILRWPSRK IKKVNRSITK LKRVIESVQD TDKALDLTSM 660 AIGSIPQTKI QATAKLLNSP SGPKEPEPPK NNDSPNYGSS GRIPQEPHGT SELPSNRCKR 720 SQNRDDSVET PTSQGSCGGN PQDETTAVNR EPVLAVDVSA SSFSMPNRLD PIQGMPIEDA 780 GSSKDLRNLC SSQRLPESNR LNTGNNSHNP TKEEGSGSET RSVTIKACYK EDIIRFRISS 840 SSSVTELKEE IAKRLRLDTA EEQDCFLRGS YSTAWAHGVS PSCGKAQQPM DGSHL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010538845.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010538845.1 | 0.0 | PREDICTED: protein NLP7-like isoform X2 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | V4MHY8 | 0.0 | V4MHY8_EUTSA; Uncharacterized protein | ||||
STRING | XP_010538844.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |