PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538651.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 740aa    MW: 81074.6 Da    PI: 5.4541
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.2e-2062117156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++eLe++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R+++k
  XP_010538651.1  62 KKRYHRHTQRQIQELEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 117
                     688999***********************************************998 PP
2START215.91.4e-672524711206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++elv++a+++ep+Wv      e++n++e+ ++f+++ +      ++ea+r+s+vv+m++ +l e+l+d++ qW+  +     +a+tle
  XP_010538651.1 252 ELAVAAMEELVRMAQSGEPLWVPGEnsaEILNEEEYFRTFPRGIGpkplgMRSEASRESAVVIMNHINLIEILMDVN-QWSCVFSgivsRAMTLE 345
                     57899*****************887788**************999********************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds ++ p    + R++++pSg+li++++ng+skvtwvehv+
  XP_010538651.1 346 VLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSEGTWAVVDVSLDSLRPSP----ISRSRRRPSGCLIQELPNGYSKVTWVEHVE 436
                     ***********************************************************99....69**************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r++h+++++lv +gla+gak+wvatl+rqce+
  XP_010538651.1 437 VDDRSVHNMYKPLVLTGLAFGAKRWVATLDRQCER 471
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-2340117IPR009057Homeodomain-like
SuperFamilySSF466895.43E-1951119IPR009057Homeodomain-like
PROSITE profilePS5007117.08659119IPR001356Homeobox domain
SMARTSM003894.0E-1960123IPR001356Homeobox domain
PfamPF000462.1E-1762117IPR001356Homeobox domain
CDDcd000863.14E-1962120No hitNo description
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
PROSITE profilePS5084844.721243474IPR002913START domain
SuperFamilySSF559613.98E-34245473No hitNo description
CDDcd088752.09E-127247470No hitNo description
SMARTSM002342.5E-72252471IPR002913START domain
PfamPF018527.6E-57253471IPR002913START domain
Gene3DG3DSA:3.30.530.203.2E-5348446IPR023393START-like domain
SuperFamilySSF559613.25E-27491732No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MYHPNMFESH LMFDMTPKSS DNDLGITQSR EDDFETKSGT DGTTENPLGE ELQDPNQRPS  60
KKKRYHRHTQ RQIQELEAFF KECPHPDDKQ RKELSRELGL EPLQIKFWFQ NKRTQMKAQH  120
ERHENQILKS ENDKLRADNN RYKEALSNAT CPNCGGPAAL GEMSFDEQHL RIENARLREE  180
IDRISAIAAK YVGKPLASSY PHLPSHMPSR SLDLEVGNFG NQTGFVGEMY GAGDILRSVS  240
IPSEADKPMI VELAVAAMEE LVRMAQSGEP LWVPGENSAE ILNEEEYFRT FPRGIGPKPL  300
GMRSEASRES AVVIMNHINL IEILMDVNQW SCVFSGIVSR AMTLEVLSTG VAGNYNGALQ  360
VMTAEFQVPS PLVPTRENYF VRYCKQHSEG TWAVVDVSLD SLRPSPISRS RRRPSGCLIQ  420
ELPNGYSKVT WVEHVEVDDR SVHNMYKPLV LTGLAFGAKR WVATLDRQCE RLASSMASNI  480
PAGDLSVITS PEGRKSMLKL AERMVMSFCS GVGASTAHAW TTLSATGSDD VRVMTRKSMD  540
DPGRPPGIVL SAATSFWIPV PPKRVFDFLR DENSRSEWDI LSNGGLIQEM AHIANGRDPG  600
NCVSLLRVNS GNSSQSNMLI LQESCTDATG SYVIYAPVDI VAMNVVLSGG DPDYVALLPS  660
GFAILPDGSG GNGVGAGGGE ENQEVASSSG GCGSLLTVAF QILVDSVPTA KLSLGSVATV  720
NSLIKCTVER IKAAVSCDGA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538651.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538642.10.0PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
RefseqXP_010538651.10.0PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A1J3I5N50.0A0A1J3I5N5_NOCCA; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
STRINGXP_010538642.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]