PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538582.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 28467.1 Da PI: 10.0725

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.7	2.4e-31	34	84	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+ XP_010538582.1 34 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 84 79***********************************************95 PP
2	K-box	97.1	2.8e-32	98	194	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s++s +e +a ++qqe++kL++ i +q+++R+l+Ge ++s+ k+L+ Le++L++++++iRskKnell+++ie+++k+e +l ++n+ Lr+k+ XP_010538582.1 98 ISDNSXSEINAHYYQQEAQKLRQHILGIQNSNRQLMGETIGSMVPKDLRTLERKLDTAISRIRSKKNELLFAEIEHMRKREADLYNDNNLLRAKI 192 567779999*************************************************************************************9 PP K-box 99 ee 100 +e XP_010538582.1 193 AE 194 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-40	26	85	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.109	26	86	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.03E-44	27	100	No hit	No description
SuperFamily	SSF55455	5.89E-33	27	99	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-33	28	48	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	28	82	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-26	35	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-33	48	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-33	63	84	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	6.7E-25	106	192	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.541	108	198	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MLQFSYFATT AYQTELGSET SLQRKSGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL 60 SVLCDAEIAL IVFSSRGRLY EYSNNSVKAT IERYKKAISD NSXSEINAHY YQQEAQKLRQ 120 HILGIQNSNR QLMGETIGSM VPKDLRTLER KLDTAISRIR SKKNELLFAE IEHMRKREAD 180 LYNDNNLLRA KIAENERNHP SMMNLMPGRS NYEEQPMMPQ PSQQFDSRSY FQVAALQPNH 240 HFSGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	4e-20	27	94	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	4e-20	27	94	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	4e-20	27	94	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	4e-20	27	94	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1tqe_P	5e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
1tqe_Q	5e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
1tqe_R	5e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
1tqe_S	5e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
3mu6_A	4e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	4e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	4e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	4e-20	27	94	1	68	Myocyte-specific enhancer factor 2A
6c9l_A	5e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_B	5e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_C	5e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_D	5e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_E	5e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
6c9l_F	5e-20	27	94	2	69	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the control of organ identity during the early development of flowers. Is required for normal development of stamens and carpels in the wild-type flower. Plays a role in maintaining the determinacy of the floral meristem. Acts as C class cadastral protein by repressing the A class floral homeotic genes like APETALA1. Forms a heterodimer via the K-box domain with either SEPALATTA1/AGL2, SEPALATTA2/AGL4, SEPALLATA3/AGL9 or AGL6 that could be involved in genes regulation during floral meristem development. Controls AHL21/GIK, a multifunctional chromatin modifier in reproductive organ patterning and differentiation (PubMed:19956801). Induces microsporogenesis through the activation of SPL/NZZ (PubMed:15254538). {ECO:0000269\|PubMed:15254538, ECO:0000269\|PubMed:19956801}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538582.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by the A class floral homeotic protein APETALA2 and by other repressors like LEUNIG, SEUSS, SAP or CURLY LEAF. Positively regulated by both LEAFY and APETALA1. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. Up-regulated by HUA2. {ECO:0000269\|PubMed:10198637, ECO:0000269\|PubMed:11058164, ECO:0000269\|PubMed:1675158, ECO:0000269\|PubMed:17794879, ECO:0000269\|PubMed:18281509, ECO:0000269\|PubMed:19783648, ECO:0000269\|PubMed:9783581}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538582.1	0.0	PREDICTED: LOW QUALITY PROTEIN: floral homeotic protein AGAMOUS-like
Swissprot	P17839	1e-129	AG_ARATH; Floral homeotic protein AGAMOUS
TrEMBL	A0A1J3EYB8	1e-131	A0A1J3EYB8_NOCCA; Floral homeotic protein AGAMOUS (Fragment)
STRING	XP_010538582.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6181	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-129	MIKC_MADS family protein

Publications ? help Back to Top
Huang Z, et al. APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana. New Phytol., 2017. 215(3): p. 1197-1209 [PMID:27604611] Rong XF, et al. Type-B ARRs Control Carpel Regeneration Through Mediating AGAMOUS Expression in Arabidopsis. Plant Cell Physiol., 2018. 59(4): p. 756-764 [PMID:29186581] Uemura A, et al. Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis. Plant Reprod, 2018. 31(1): p. 89-105 [PMID:29218596]