PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538544.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TCP

Protein Properties

Length: 393aa MW: 42971.2 Da PI: 7.5507

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123	3.4e-38	63	203	3	132
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec........eaesssssasns 85 g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a ai el+++ +++++ ++ ++ XP_010538544.1 63 GRKDRHSKVWTSKGPRDRRVRLSVPTALQFYDLQDRLGYDQPSKAVEWLIRAAADAISELPSLnatfPTDDE--RiagnenvlAENLTQN----- 150 89***********************************************************775522222..1223211221111222..... PP TCP 86 ssg.......kaaksaakskksqksaasalnlak.esrakarararertrekmri 132 + ++ +++a+s++s++s++s l+l++ e r +ar+rarert++++ XP_010538544.1 151 --PnsiqeqtASLSKSACSSNSETSKNSGLSLSRsELRDEARERARERTAKEKER 203 ..122345557777778999**********9**********88776554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.7E-38	63	202	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.895	64	122	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.321	183	201	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MEIENIQMFP EIGRTGEMLR DGMKKAGNNT NGNNGIAAGD IGNRLSRWHH HSSRIIRVSK 60 VSGRKDRHSK VWTSKGPRDR RVRLSVPTAL QFYDLQDRLG YDQPSKAVEW LIRAAADAIS 120 ELPSLNATFP TDDERIAGNE NVLAENLTQN PNSIQEQTAS LSKSACSSNS ETSKNSGLSL 180 SRSELRDEAR ERARERTAKE KERESHTVND NSHGHASFTE LLTGSVHAGS ETGSVNQSRQ 240 WMASPAPMEY ISSGLLLGSG QAQFPFQTVS LPFSTMSDQH QHQHPHQEFS FVPDHLISPA 300 VGASFNLDFN IPSSSAMAGF NGSNRGTLQS NSQNHQSFLV NLQRFSSDGG GSGGGAPFLI 360 GALPAENHHH NLQFQLCNEN GCRNSEQKGK GKS

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MEIENIQMFP EIGRTGEMLR DGMKKAGNNT NGNNGIAAGD IGNRLSRWHH HSSRIIRVSK  60
VSGRKDRHSK VWTSKGPRDR RVRLSVPTAL QFYDLQDRLG YDQPSKAVEW LIRAAADAIS  120
ELPSLNATFP TDDERIAGNE NVLAENLTQN PNSIQEQTAS LSKSACSSNS ETSKNSGLSL  180
SRSELRDEAR ERARERTAKE KERESHTVND NSHGHASFTE LLTGSVHAGS ETGSVNQSRQ  240
WMASPAPMEY ISSGLLLGSG QAQFPFQTVS LPFSTMSDQH QHQHPHQEFS FVPDHLISPA  300
VGASFNLDFN IPSSSAMAGF NGSNRGTLQS NSQNHQSFLV NLQRFSSDGG GSGGGAPFLI  360
GALPAENHHH NLQFQLCNEN GCRNSEQKGK GKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-22	69	123	1	55	Putative transcription factor PCF6
5zkt_B	1e-22	69	123	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179, ECO:0000269\|PubMed:26596765}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538544.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:26596765}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538544.1	0.0	PREDICTED: transcription factor TCP2
Swissprot	Q93V43	1e-139	TCP2_ARATH; Transcription factor TCP2
TrEMBL	A0A1J3EG29	1e-140	A0A1J3EG29_NOCCA; Transcription factor TCP2
STRING	XP_010538544.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7615	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	1e-109	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]