PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538544.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 393aa    MW: 42971.2 Da    PI: 7.5507
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1233.4e-38632033132
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec........eaesssssasns 85 
                     g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a  ai el+++    +++++            ++  ++     
  XP_010538544.1  63 GRKDRHSKVWTSKGPRDRRVRLSVPTALQFYDLQDRLGYDQPSKAVEWLIRAAADAISELPSLnatfPTDDE--RiagnenvlAENLTQN----- 150
                     89*************************************************************775522222..1223211221111222..... PP

             TCP  86 ssg.......kaaksaakskksqksaasalnlak.esrakarararertrekmri 132
                       +       ++ +++a+s++s++s++s l+l++ e r +ar+rarert++++  
  XP_010538544.1 151 --PnsiqeqtASLSKSACSSNSETSKNSGLSLSRsELRDEARERARERTAKEKER 203
                     ..122345557777778999**************9************88776554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-3863202IPR005333Transcription factor, TCP
PROSITE profilePS5136931.89564122IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.321183201IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEIENIQMFP EIGRTGEMLR DGMKKAGNNT NGNNGIAAGD IGNRLSRWHH HSSRIIRVSK  60
VSGRKDRHSK VWTSKGPRDR RVRLSVPTAL QFYDLQDRLG YDQPSKAVEW LIRAAADAIS  120
ELPSLNATFP TDDERIAGNE NVLAENLTQN PNSIQEQTAS LSKSACSSNS ETSKNSGLSL  180
SRSELRDEAR ERARERTAKE KERESHTVND NSHGHASFTE LLTGSVHAGS ETGSVNQSRQ  240
WMASPAPMEY ISSGLLLGSG QAQFPFQTVS LPFSTMSDQH QHQHPHQEFS FVPDHLISPA  300
VGASFNLDFN IPSSSAMAGF NGSNRGTLQS NSQNHQSFLV NLQRFSSDGG GSGGGAPFLI  360
GALPAENHHH NLQFQLCNEN GCRNSEQKGK GKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2269123155Putative transcription factor PCF6
5zkt_B1e-2269123155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538544.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538544.10.0PREDICTED: transcription factor TCP2
SwissprotQ93V431e-139TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A1J3EG291e-140A0A1J3EG29_NOCCA; Transcription factor TCP2
STRINGXP_010538544.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-109TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]