PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538494.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 362aa    MW: 40620.9 Da    PI: 7.5254
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.5e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l  ++++ G g+W++ ++  g++R++k+c++rw +yl
   XP_010538494.1 15 KGPWTEEEDEKLRGYIREKGFGNWRSLPKLAGLNRCGKSCRLRWMNYL 62
                     79********************************************97 PP
2Myb_DNA-binding54.92e-1768112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ +E+ l+v++++++G++ W++Ia++++ gRt++++k++w+++
   XP_010538494.1  68 RGNFSHDEERLIVNLHALFGNK-WSKIASHLP-GRTDNEIKNYWNTH 112
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.9271062IPR017930Myb domain
SuperFamilySSF466899.73E-3112109IPR009057Homeodomain-like
SMARTSM007171.2E-131464IPR001005SANT/Myb domain
PfamPF002491.2E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-221669IPR009057Homeodomain-like
CDDcd001674.39E-111762No hitNo description
PROSITE profilePS5129427.28263117IPR017930Myb domain
SMARTSM007171.4E-1667115IPR001005SANT/Myb domain
PfamPF002496.8E-1668112IPR001005SANT/Myb domain
CDDcd001671.21E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MVRSPCCDEE KGVKKGPWTE EEDEKLRGYI REKGFGNWRS LPKLAGLNRC GKSCRLRWMN  60
YLRPDIRRGN FSHDEERLIV NLHALFGNKW SKIASHLPGR TDNEIKNYWN THIRKKLLKM  120
GIDPNTHKPR TDINHILDSV SPLLAGAATA NRRRFANDSL FNNIAFEEVV KVQLLHNILH  180
MMNPKTVPNI LSLDTNGINP PKAKPAEGQS NTVCPQLFTN PFGSTPQTNM DLGPSLENLC  240
GIKQNQTRGS WDILAENRLP GLVSVCQDNS STKLVTTAGN VQIGTSLEPG LYGYHDQFPE  300
IPYSVPVYAD MPGLNRTETA QRSTGSDALE AWEKLLDDET SDSCWKSFLD LTSPNSSAED  360
HL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26151177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538494.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538494.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ8GWP01e-130MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A178USW31e-128A0A178USW3_ARATH; MYB39
STRINGXP_010538494.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.11e-133myb domain protein 39