PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538472.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 359aa    MW: 39491.1 Da    PI: 4.9132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19218268255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + +  r++lg+f++a +Aa+a+++a+ kl+g
  XP_010538472.1 218 HYRGVRQRP-WGKFAAEIRDP---NrRGSRVWLGTFDSAIDAARAYDRAAFKLRG 268
                     7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-32217277IPR001471AP2/ERF domain
PfamPF008472.4E-13218268IPR001471AP2/ERF domain
SMARTSM003807.7E-36218282IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-22218277IPR016177DNA-binding domain
PROSITE profilePS5103224.131218276IPR001471AP2/ERF domain
CDDcd000183.35E-19218276No hitNo description
PRINTSPR003671.7E-13219230IPR001471AP2/ERF domain
PRINTSPR003671.7E-13258278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MATPSEVSAL LFIKKHLLDE TSPVATVSAS ATSVAACFPD NRCMSDSMLG VSGSSCSVSD  60
SADCSRNSSS ASSSMAVPDL QPAAGFTDFA YFSPGGNDFF EPETKPEIID LVTPKSKDFV  120
SRSLDFEAEF SDFEQKARIP SAPSWDRFDS ELKAEIPTES QNSFEFETNS FAVSDSTSHS  180
KRNPPLKISL PSRTEWIISS VAEKPISQGR SIVEEKRHYR GVRQRPWGKF AAEIRDPNRR  240
GSRVWLGTFD SAIDAARAYD RAAFKLRGSK AILNFPLEAG KWNTSPPIDD ADKKRKRNEE  300
EGEKAAEKVP RKEEGEAMEA KSTALTSWSA VCEWDLTEFL NMPPLSPLSP FGYPQLAVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-29217278465ATERF1
3gcc_A6e-29217278465ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538472.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538472.10.0PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A1J3J0J04e-98A0A1J3J0J0_NOCCA; Ethylene-responsive transcription factor 6
STRINGXP_010538472.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-61ethylene responsive element binding factor 5