PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538384.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 515aa    MW: 56595 Da    PI: 5.7559
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.55e-34541452102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y +++d+++++++sws+++nsfvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ +           eF+++ F +g+k+ll++
  XP_010538384.1  54 FLSKTYGMVDDPATDSIVSWSRTNNSFVVWNPPDFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDL---------REFANEGFLRGQKHLLKT 139
                     9********************999****************************************9998.........57**************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  XP_010538384.1 140 ITRRKP 145
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-3846138IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.49E-3449143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-6150143IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3054143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-205477IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-2092104IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434093117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-20105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MGGAKGRNSS GESETSTSDS AGGVGSTVAA QTQQPPPPQP QPVAVQNANA PPPFLSKTYG  60
MVDDPATDSI VSWSRTNNSF VVWNPPDFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD  120
LREFANEGFL RGQKHLLKTI TRRKPAHGHG HQHSHGQSSS VGACVEVGKF GLEEEVERLK  180
RDKNVLMQAL VRLRQQQQST DNQLQTMIQR LQGMEQRQQH IMSFLAKAVQ SPHFLAQFLQ  240
PQQQNESNRR ISEANKKRRL KKGGITENQS AASPDGQIVK YQPPMHEQAE AMFRQLMKME  300
PYRSSDESFL PGNDTPSMGI ETETSSIHVS GVTLQEMPPT SFPHPSATVS EIHSSSPSGT  360
TPNKVTVAKF ADLGGYAPPE EANRESVPSP DLALPDFSEM LPDSSVDVPA DSFMEPDTGS  420
CAFEDLDSLV NGSLPFDIDD IPPDAEIDPL VDYSTLGRLS RSSPVPDDIM DSAPADATTE  480
KKQNGRDKAK HIGKLTEQMG LLSPEIKNFP PRQDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-265214318120Heat shock factor protein 1
5d5u_B8e-265214327129Heat shock factor protein 1
5d5v_B8e-265214327129Heat shock factor protein 1
5d5v_D8e-265214327129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254261NKKRRLKK
2255260KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538384.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538384.10.0PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor A-1d-like
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A178WGY50.0A0A178WGY5_ARATH; HSFA1D
STRINGXP_010538384.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-180heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]