PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538359.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 438aa MW: 48172.6 Da PI: 7.8973

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538359.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.8	4.5e-21	35	124	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+laL++a++e++ +lrrg+l++++W++v++ + + +g +s++qC++k+e+l+kry+++k++ +r + ss++ +f l+ XP_010538359.1 35 CWTDEETLALVNAYKEKWFALRRGNLRAADWDDVAASVsassSGEGPPKSAIQCRHKIEKLRKRYRAEKQRCLNRPGKFSSSWDLFPLLD 124 8***********************************999888999*********************9999999*****9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.4E-22	34	126	No hit	No description
PROSITE profile	PS50090	6.272	36	96	IPR017877	Myb-like domain
SMART	SM00595	1.1E-4	43	131	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MSTPDDGSLT SVAHADASAA AVTVAATTRR VPPPCWTDEE TLALVNAYKE KWFALRRGNL 60 RAADWDDVAA SVSASSSGEG PPKSAIQCRH KIEKLRKRYR AEKQRCLNRP GKFSSSWDLF 120 PLLDAMGFAP PTPAAVESQD PDMEHDYDIK GGPMDGFRAS KSKRFGKLDA FSDCGRDLGD 180 GFGFRSRAKN HMQFSGGFKG EFDSDYDSSG GFGLKRKYNG NFKPSVDLDG DSDDEIMLQP 240 KTVRTKAHGK PSTVGFSHAG GGFPIKSFGD RNFASPGFKP KSFSRSDVDF SPNLDYDDEI 300 YGGTNRGDGF NQRSQGSRGS IQANGNYTRY AGAPNGYGSS SRLGYGQSNA ADTEPDPIDE 360 VVSSIKMLTE MFVRVENSKM EMAKEMEKTR MEMELKHCQM MLESQQQIID AFTEALIEKK 420 RKKKENENAK NSIKSTQA

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MSTPDDGSLT SVAHADASAA AVTVAATTRR VPPPCWTDEE TLALVNAYKE KWFALRRGNL  60
RAADWDDVAA SVSASSSGEG PPKSAIQCRH KIEKLRKRYR AEKQRCLNRP GKFSSSWDLF  120
PLLDAMGFAP PTPAAVESQD PDMEHDYDIK GGPMDGFRAS KSKRFGKLDA FSDCGRDLGD  180
GFGFRSRAKN HMQFSGGFKG EFDSDYDSSG GFGLKRKYNG NFKPSVDLDG DSDDEIMLQP  240
KTVRTKAHGK PSTVGFSHAG GGFPIKSFGD RNFASPGFKP KSFSRSDVDF SPNLDYDDEI  300
YGGTNRGDGF NQRSQGSRGS IQANGNYTRY AGAPNGYGSS SRLGYGQSNA ADTEPDPIDE  360
VVSSIKMLTE MFVRVENSKM EMAKEMEKTR MEMELKHCQM MLESQQQIID AFTEALIEKK  420
RKKKENENAK NSIKSTQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	418	422	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538359.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538359.1	0.0	PREDICTED: uncharacterized protein LOC104812737
Swissprot	O23550	1e-109	FRIP2_ARATH; Protein FIP2
TrEMBL	V4LYH9	0.0	V4LYH9_EUTSA; Uncharacterized protein
STRING	XP_010538359.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	5e-24	Trihelix family protein

Publications ? help Back to Top
Sakai T, et al. The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots. Plant J., 2012. 70(2): p. 303-14 [PMID:22122664]