PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538162.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 311aa MW: 34198.3 Da PI: 5.8638

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.9	2.8e-28	41	131	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e+r+rrg + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e++s + + ++l+ XP_010538162.1 41 RWTRQEILVLIQGKRVAENRVRRGHvvgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIKDETESFWLMRNDLR 131 8********************8555556********************************************999999999888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-5	41	102	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.586	41	103	IPR017877	Myb-like domain
Pfam	PF13837	4.0E-12	41	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MASEELSLGT SNVDSDVNGV IHAFGGGDGG DDGVKTARLP RWTRQEILVL IQGKRVAENR 60 VRRGHVVGSG QVEPKWASVS SYCKRHGVNR GPVQCRKRWS NLAGDFKKIK EWESQIKDET 120 ESFWLMRNDL RRERKLPGFF DKEVYDIIDG SATPAAAEEP ALVLALAPAS TSAEEGLFSD 180 FEQEETVKAI PTGVPLSVSE KVGQAASGAG KGATDEKQQP VANPKAGSAS QEQRKLKRKA 240 PGEEEEEEEA NRMQHKVIEV LERSSKMLET QLEAQNSNLR QDREQRKDIG DSLVAVLNKL 300 ADVLGRIADK L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538162.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538162.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	1e-127	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A087GMB2	1e-136	A0A087GMB2_ARAAL; Uncharacterized protein
STRING	XP_010538162.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-113	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]