PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010538053.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 32430 Da PI: 4.6223 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEd++lv ++++G g+W++ +++ + R++k+c++rw++yl XP_010538053.1 14 KGEWTTEEDQKLVAFINEHGIGDWRSLPQKADLQRCGKSCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+e ++++++ lG++ W++Ia+ + +Rt++++k++w++ XP_010538053.1 67 RGKFSHEEEEAIIQLHAVLGNR-WAAIAKQLS-NRTDNDIKNHWNSC 111 89********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.997 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.95E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.41E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.641 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.86E-10 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 290 aa Download sequence Send to blast |
MGRTTWFDAD GMKKGEWTTE EDQKLVAFIN EHGIGDWRSL PQKADLQRCG KSCRLRWLNY 60 LRPGIKRGKF SHEEEEAIIQ LHAVLGNRWA AIAKQLSNRT DNDIKNHWNS CLKKRLARNG 120 IDPMTHEPFN VTGATTSSSS SATETATSPV TPSSCSSSSS GSARLLNKLA AGVRRRSFDL 180 KTILSQTPET ATVTVNCHDQ EEESEKNDNE MDVLMWDEDD MDIGGDVDIG CCMEKLSFMD 240 ETMSFEGFGD ISTTTTSFDG CDSFMYLDTS TLRGQYSSDL YEIDDIGRLI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010538053.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010538053.1 | 0.0 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | O64399 | 6e-62 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | A0A0D3CBB1 | 3e-93 | A0A0D3CBB1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A0N6Z0R7 | 3e-93 | A0A0N6Z0R7_BRANA; MYB transcription factor 47 | ||||
STRING | XP_010538053.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18710.1 | 2e-84 | myb domain protein 47 |