PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010537864.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | AP2 | ||||||||
Protein Properties | Length: 348aa MW: 39659.1 Da PI: 9.0831 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.8e-16 | 50 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n kr ++++lg ++ +e Aa+a++ a++k++g XP_010537864.1 50 SVYRGVTRHRWTGRYEAHLWDkNCWNEtqnKRgRQVYLGAYDDEEAAARAYDLAALKYWG 109 78*******************999966656557*************************98 PP | |||||||
2 | AP2 | 39.9 | 1e-12 | 170 | 214 | 8 | 55 |
AP2 8 wdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_010537864.1 170 RHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 214 57779******99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-12 | 50 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-17 | 50 | 119 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.8E-26 | 51 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-16 | 51 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.877 | 51 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-6 | 52 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-6 | 99 | 119 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.30E-21 | 152 | 224 | No hit | No description |
SMART | SM00380 | 2.0E-21 | 153 | 228 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.675 | 153 | 222 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-15 | 170 | 224 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-8 | 170 | 214 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-13 | 170 | 223 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEKGSRRSKK AADKTRSAIA SEMASTTLGV QKAKRRRRSL PRDAPPQRSS VYRGVTRHRW 60 TGRYEAHLWD KNCWNETQNK RGRQVYLGAY DDEEAAARAY DLAALKYWGR DTILNFPVSG 120 YEEDLKEMES QSKEEYIGSL RRRSSGFSRG VSKYRGVARR YELVSNKFGR HHHNGRWEAR 180 IGRVFGNKYL YLGTYATQEE AAIAYDMAAI EYRGLNAVTN FDLSRYLKFL SPENSTDGKV 240 RLTEAPNPDA NPSPERNLES ESSLDQTSSS SDNKDESSPV RKFLLSPSKV KEIIEPSTPP 300 EVAPPRRSFP EDIQTFFGCQ DCGMFTTEDD VIFGELGSFL SPEFYSEL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010537864.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010537864.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Refseq | XP_010537865.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
Swissprot | Q94AN4 | 1e-147 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A1J3IKB9 | 1e-163 | A0A1J3IKB9_NOCCA; AP2-like ethylene-responsive transcription factor | ||||
STRING | XP_010537864.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM553 | 27 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-131 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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